PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07911
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 657aa    MW: 72742 Da    PI: 7.7896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07911genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.5e-152468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
       PEQU_07911 24 RERWTEEEHGRFLEALKLYGRA-WQRIEEHIG-TKTAIQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-161874IPR009057Homeodomain-like
PROSITE profilePS5129418.8941973IPR017930Myb domain
TIGRFAMsTIGR015571.4E-162271IPR006447Myb domain, plants
SMARTSM007171.1E-102371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-72364IPR009057Homeodomain-like
PfamPF002491.3E-112467IPR001005SANT/Myb domain
CDDcd001675.49E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MEMNSFGEDL VVKARKPYTI TKQRERWTEE EHGRFLEALK LYGRAWQRIE EHIGTKTAIQ  60
IRSHAQKFFT KLEKEAVATG IPLGRVHDID IPPPRPKKKP NYPYPRKIGS CSAPSLIEAA  120
DEKTLKTVNP IPQEINKQEA SVVAKSPHQT KEYCDEARCS VVLNLFQEAP SASIASRDKA  180
SKSQLSFREY VPTAMPLKEP PSLKRSSLTI EVNMESTSNG MTECDQDLRR TSGINMELHA  240
LSASSGNGET SGAQKQPKNQ SDTNREAKAM HIKCVDGCNL KTTLENGYSS SSANPLMNHT  300
IPAAPAFHSC SATSYISHPF PTFPSLSPAQ LQTSHDFYRS FLGMSSTFSS EIVSALLRYS  360
AGHAAACMSA ASHWHSDEMD SSKVEAIAAA TVAAASAWWT TNGLIPFFSP IHASGFAFSP  420
PATSFPVMNT DQTPQEKMER HETYQNSSLD QTAVVSSPSL SSSSNLEENE KNFSNFNNFK  480
PLSDTAYHDS DRAKINKHER SSCGSNTTSS SEIERFTSIK KNGETKDATI QAQTENLQDG  540
EVNTRRGRSS SCSNETWKEV SQEGRLAFQA LFTRDILPQS FATQLDKLES GLHEEEMGRT  600
GRDQTTQNHS LPIEIKHGNL KVRRTGFKPY KRCSAEAGVN NYSAKDETNN KKIRMEG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020581341.10.0protein CCA1-like
RefseqXP_020581342.10.0protein CCA1-like
TrEMBLA0A2I0X2B10.0A0A2I0X2B1_9ASPA; Protein LHY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.42e-42MYB_related family protein