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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 147aa MW: 16145.8 Da PI: 10.3701 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00077 | 29 | 49 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C+ ++++++L++H + PEQU_07874 29 FTCEVCKIDCNSQETLNTHKM 49 89*****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.6E-10 | 21 | 61 | No hit | No description |
SMART | SM00451 | 0.0039 | 26 | 60 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 2.1E-7 | 29 | 53 | No hit | No description |
SMART | SM00355 | 0.45 | 29 | 53 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 31 | 53 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.51E-9 | 110 | 143 | No hit | No description |
SMART | SM00355 | 5.2 | 112 | 136 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.3E-8 | 114 | 136 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 114 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00451 | 0.0023 | 114 | 143 | IPR003604 | Zinc finger, U1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSYAKKSAAL RPFNIATSFT KAAKPVQTFT CEVCKIDCNS QETLNTHKMG KKHKAKLQKL 60 QEKITPKPSV ASSGHNETAK PESVKKKPSG KEGVQVKKEK VVQGGAAEEA IMICSLCDIV 120 CNSKSVYESH ITGRKHLSMI KKQETRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581524.1 | 1e-101 | zinc finger protein 346-like | ||||
TrEMBL | A0A2I0X5T2 | 2e-55 | A0A2I0X5T2_9ASPA; Uncharacterized protein | ||||
STRING | XP_008776992.1 | 2e-36 | (Phoenix dactylifera) |