PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07816
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 454aa    MW: 50016.3 Da    PI: 8.9346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07816genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116082123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C+ C++ F r  nL+ H r H
  PEQU_07816 60 YICEVCHRGFQRDQNLQLHRRGH 82
                89*******************88 PP
2zf-C2H211.50.00091136158123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H +++
  PEQU_07816 136 WKCDKCSKKYAVQSDWKAHSKNC 158
                 58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.91E-65982No hitNo description
Gene3DG3DSA:3.30.160.601.6E-45982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0656082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5546082IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM0035591101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4124156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-6131155No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MSDVIEEEKH NRAALMAAMR KTETGIPTEI KKRRNPPGNP DPDAQVVALS PRTLLATNRY  60
ICEVCHRGFQ RDQNLQLHRR GHNLPWKLKL KSSTEPKKRV YVCPELTCVH HDPNRALGDI  120
TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHSKNCGT KEYRCDCGTI FTRKDSFVTC  180
RAFCGAPAEK NYRTDHGLAA MAGNLPGQHQ RLLSPSMQCL GSSITDNKIN ILGSETNTSN  240
SLKFVSLNSL MQTSSNTLYN TGSMSMGSSI MSATALLQKA SEMGVKISDE STSPVLFGGF  300
TAFSNTNTET GMMRDFVNSY NNNDAQCLNV AEASSEAMNA RFVPSSAGCP FVGVQNMFQT  360
SSKGNADGSG FRTTTVRFPF GRETKIDMNN GGNLGEDNVG KRDGRMTQDF LGLAASGSMG  420
VGSSGNSNYN EDEMYSFHQM SDGQTILGKH MWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-28132193364Zinc finger protein JACKDAW
5b3h_F8e-28132193364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020581388.10.0protein indeterminate-domain 2-like
TrEMBLA0A2I0WWA21e-170A0A2I0WWA2_9ASPA; Zinc finger protein MAGPIE
STRINGXP_008797147.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-89indeterminate(ID)-domain 2