PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07685
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 402aa    MW: 46012.4 Da    PI: 5.2098
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07685genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++l+d ++++++sws++g+sf+v+++ +fa+++Lp yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F +g+k+ll++i+
    PEQU_07685  14 FLIKTYDMLDDTSTDSIVSWSASGSSFIVWNPLDFARDLLPAYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFIRGQKHLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    PEQU_07685 102 RRK 104
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.7E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEGSHGVSSS PAPFLIKTYD MLDDTSTDSI VSWSASGSSF IVWNPLDFAR DLLPAYFKHN  60
NFSSFIRQLN TYGFRKIDPE RWEFANEEFI RGQKHLLKNI HRRKPIHSHS ISPLGSNVAV  120
PLSEPERQEL KKEIERLKHD ETALIIELQS HAQIQQGMDL QMQDLEERLQ AMVLRQRNLI  180
SFLDQVIQRP GFLSNLIHQS DLHPKRRRLP KNDYFLQHTI IQDGKNLSFH NLLDIEPFEK  240
MESSLNSLET FFQEVGQASG EDAFFEERLP RLTAAVLPDI DSQSPTPHSA DFRSLQAGMN  300
SKVSDIDMNS EPVVHLRDRE TETPATTAVV AGGVNDTFWE QFLTESPCYC DAQESQPEKS  360
DIDDGGRRAE EVTEQGRAWW SRRSVDHLTE RMGHLTSAER TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25310319129Heat shock factor protein 1
5d5v_B2e-25310319129Heat shock factor protein 1
5d5v_D2e-25310319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204208KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020581295.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-4b-like
TrEMBLA0A2I0WYC50.0A0A2I0WYC5_9ASPA; Heat stress transcription factor A-4b
STRINGXP_008776668.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-88heat shock transcription factor A4A