PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07490
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 749aa    MW: 81985.2 Da    PI: 6.2103
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07490genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.9e-204297156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  PEQU_07490 42 KKRYHRHTSRQIQEMEALFKECPHPDDKQRLRLSQELGLKPRQVKFWFQNRRTQMK 97
                688999***********************************************998 PP
2START156.42.3e-492464772206
                 HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS..................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
       START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.................dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                 la +aa++ +++  ++ep+W k +    +e   e l ++e                     +++e  r++g+v+m+  +lv  ++d + qW e+++   
  PEQU_07490 246 LAMAAAEQMLRMSRVNEPLWLKKVgngVGEGAVEFLDEEE---HarlfpwpmelkqmggggYRVEGTRDTGLVIMNGITLVDAFMDAN-QWLEMFPsiv 340
                 678899999***************6654444444444444...33458899999999*******************************.********** PP

                 .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
       START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                  ka+t++ i++g      g l+lm+ae+q+lsplvp R+ +f Ry++q  ++g+w+ivd  vd+ q+   + +++R +++pSg++i++++ng+skvtw+
  PEQU_07490 341 sKAKTIQIITTGlpgngsGSLHLMYAEFQVLSPLVPtREAYFFRYCQQnVEEGTWTIVDFPVDNLQDII-QMPLMRYRRRPSGCVIQSMPNGYSKVTWI 438
                 ************************************************99*****************87.9**************************** PP

                 E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                 e+++++++ +h+++ ++v+sg+ +ga +w+++lq qce+
  PEQU_07490 439 EQAEVEDKPIHQIFSQFVNSGMGFGATRWLSALQLQCER 477
                 *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-2027100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2137104IPR009057Homeodomain-like
PROSITE profilePS5007117.1193999IPR001356Homeobox domain
SMARTSM003895.7E-1940103IPR001356Homeobox domain
CDDcd000864.38E-1942100No hitNo description
PfamPF000466.2E-184297IPR001356Homeobox domain
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PROSITE profilePS5084842.172236480IPR002913START domain
SMARTSM002348.0E-31245477IPR002913START domain
PfamPF018521.3E-40246477IPR002913START domain
CDDcd088756.33E-106255476No hitNo description
SuperFamilySSF559611.28E-28304479No hitNo description
SuperFamilySSF559611.74E-16493724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
KEEEMESASG SGHLEGLSCG EENDDGTPPP LTLPSNSAPA KKKRYHRHTS RQIQEMEALF  60
KECPHPDDKQ RLRLSQELGL KPRQVKFWFQ NRRTQMKAQQ DRSDNVILRA ENDSLKNENY  120
RLQAAIRNVI CPNCGGPAML GEMSFDEHHL RIENARLKEE LDRLSCIAGR LGGGGGRSLL  180
PSSPNLLLPP SLDLDMGAYS RQFHDLPPPP AGSCCDMLLG SGLVDEDSAF AGMLIMEGKK  240
PLALELAMAA AEQMLRMSRV NEPLWLKKVG NGVGEGAVEF LDEEEHARLF PWPMELKQMG  300
GGGYRVEGTR DTGLVIMNGI TLVDAFMDAN QWLEMFPSIV SKAKTIQIIT TGLPGNGSGS  360
LHLMYAEFQV LSPLVPTREA YFFRYCQQNV EEGTWTIVDF PVDNLQDIIQ MPLMRYRRRP  420
SGCVIQSMPN GYSKVTWIEQ AEVEDKPIHQ IFSQFVNSGM GFGATRWLSA LQLQCERLAA  480
LMATNISDLG VISTPEGRKN IIKLSHRMVR TFYASITSSG GQSWTALSDS PDDTIRVTTR  540
KNTLPGQPNG VILSAVSTAW LPFSYHQVFD LLTDQQRRSQ LDALSSGNSL HEIDHIANGS  600
HPKNCVSLLR VNAASNSSQK VELLLQESRT HPSGGSLIVY ATIDVGAVQL VTNGEDTSYI  660
PLLPTGFVLF PAEQPASASC SNTATNNSVP VGCLLTVGMQ VLASAVPSAK LNLSSVTAVN  720
HHLFSAVHQI SNALAGSVST VAPPSLEQQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577606.10.0homeobox-leucine zipper protein ROC3 isoform X2
RefseqXP_020577607.10.0homeobox-leucine zipper protein ROC3 isoform X3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2I0VZC10.0A0A2I0VZC1_9ASPA; Homeobox-leucine zipper protein ROC3
STRINGXP_008800084.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7