PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WRKY

Protein Properties

Length: 356aa MW: 38916 Da PI: 4.9431

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_07445	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.4e-31	155	213	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+ PEQU_07445 155 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSDHNHP 213 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.535	149	215	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	8.8E-31	152	215	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-26	153	215	IPR003657	WRKY domain
SMART	SM00774	8.6E-37	154	214	IPR003657	WRKY domain
Pfam	PF03106	1.5E-25	156	213	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MCDYFWQRME KGQGDLTDIF QGSGLAGPVS TSADIPTITT DTSWQPHLDP AATIPSSTDG 60 FQENFTGIKD PMLHELVGTG FFGYTEKLAE SMAIAVVKQP PLAGLTDAGK IGGGVAIPVP 120 RTQGIKRRKN QARKVVCIPA PAAASNKPGG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC 180 SSSKGCSARK QVERSRTDPN MLVITYTSDH NHPWPTQRNA LAGSTRSQCN SKNNNNASSS 240 KTSSTDQKLV PVENVSTREE EEEEEQEVEE EEEAQGSPIS SSLPLVKESE NNTLPEHFHH 300 DFNQGIHKSF NELEPDDFFA DLAVLEASTM SLDGEKSNNK AMDPFNMFGW DGGNSS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MCDYFWQRME KGQGDLTDIF QGSGLAGPVS TSADIPTITT DTSWQPHLDP AATIPSSTDG  60
FQENFTGIKD PMLHELVGTG FFGYTEKLAE SMAIAVVKQP PLAGLTDAGK IGGGVAIPVP  120
RTQGIKRRKN QARKVVCIPA PAAASNKPGG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC  180
SSSKGCSARK QVERSRTDPN MLVITYTSDH NHPWPTQRNA LAGSTRSQCN SKNNNNASSS  240
KTSSTDQKLV PVENVSTREE EEEEEQEVEE EEEAQGSPIS SSLPLVKESE NNTLPEHFHH  300
DFNQGIHKSF NELEPDDFFA DLAVLEASTM SLDGEKSNNK AMDPFNMFGW DGGNSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-24	130	216	3	80	Disease resistance protein RRS1
5w3x_D	1e-24	130	216	3	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020577525.1	0.0	probable WRKY transcription factor 14
Swissprot	Q9SA80	2e-68	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A2I0W954	1e-163	A0A2I0W954_9ASPA; Putative WRKY transcription factor 14
STRING	OS04T0597300-01	1e-87	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	1e-67	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]