PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 19413.9 Da PI: 7.9372 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.6 | 2.3e-21 | 82 | 131 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g PEQU_07278 82 KYRGVRQRP-WGKWVAEIRDPR----RaVRKWLGTFDTAEEAARAYDKAAIEFRG 131 8********.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-14 | 82 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-35 | 82 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 82 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.658 | 82 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 82 | 139 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.6E-12 | 83 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-31 | 85 | 138 | No hit | No description |
PRINTS | PR00367 | 8.6E-12 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MEPNPPTKRR LSAEQETSIL IESLIHVISG MPDDTAPTFS LPAVDNCKQC GVDGCLGCHF 60 FESSVLSEDK RSKRRKREKR IKYRGVRQRP WGKWVAEIRD PRRAVRKWLG TFDTAEEAAR 120 AYDKAAIEFR GARAKLNFSS VDQVIELTPT AGTTEEEISR ESPDEWIYLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 83 | 138 | 6 | 62 | ATERF1 |
3gcc_A | 2e-20 | 83 | 138 | 6 | 62 | ATERF1 |
5wx9_A | 2e-20 | 82 | 138 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 78 | RRKREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575675.1 | 1e-123 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 2e-30 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2I0WW74 | 2e-62 | A0A2I0WW74_9ASPA; Ethylene-responsive transcription factor ERF109 | ||||
STRING | BRADI3G38140.1 | 7e-49 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-26 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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