PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06830
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 467aa    MW: 53816.7 Da    PI: 6.6227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06830genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05158180323
                 ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                 C+   Cgk+F++   L++H   H
  PEQU_06830 158 CTydGCGKTFTDAGALRKHTHIH 180
                 77889**************9887 PP
2zf-C2H216.62.3e-05185209123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp   Cgk F ++s LkrH   H
  PEQU_06830 185 FVCPveGCGKKFLDSSKLKRHNLIH 209
                 89*******************8777 PP
3zf-C2H213.20.00027275300123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 ++Cp   Cgk++++   L++Hi+t H
  PEQU_06830 275 HVCPypECGKRYTHECKLNTHIKTqH 300
                 79**********************99 PP
4zf-C2H214.30.00012332357123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y+Cp   C k + + + L+ H+r+ H
  PEQU_06830 332 YVCPfaGCEKAYIHEYKLNLHLRKeH 357
                 9***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-12153181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.9E-4156180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.136156185IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-6157181No hitNo description
PROSITE patternPS000280158180IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-9179222No hitNo description
Gene3DG3DSA:3.30.160.601.1E-13182204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.129185214IPR007087Zinc finger, C2H2
SMARTSM003550.0022185209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-9205225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.29E-10255301No hitNo description
Gene3DG3DSA:3.30.160.607.1E-10261298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.847275305IPR007087Zinc finger, C2H2
SMARTSM003550.066275300IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277300IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-8328355IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-5328367No hitNo description
PROSITE profilePS5015711.198332362IPR007087Zinc finger, C2H2
SMARTSM003550.0057332357IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280334357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGVWKEGSIH GDFSLLLMDP HLVGSYLSST VLLFFLNLVP HDQPIVFRRP FFETLATIFD  60
DRRRNELGER LSRRQRWSLT RIGRGWILRG GDPPFGGFCV YLCVYVFRVP QDVVATGGRC  120
FLLKWVTEDQ LNALREKTKE VELEEQKPKP ATEMFFLCTY DGCGKTFTDA GALRKHTHIH  180
GERQFVCPVE GCGKKFLDSS KLKRHNLIHT GEKSHYCPYE GCGKSDPYLE EQLDDLWLQL  240
KKSLTADEGI RWLKAFSLDF NLRAHMKTHS AENYHVCPYP ECGKRYTHEC KLNTHIKTQH  300
EKDAMVDMRT QEKLNSAAKV PVLSSTPSDR PYVCPFAGCE KAYIHEYKLN LHLRKEHPGH  360
NPEECYKIGS TNIDPWFDDL NEQDALLNNK HSKRGKTGLS RKLPPAKVAK HRGSSPALVV  420
SNDAQKRQPS KELDEDSEET EEDQEEDDNG WRYLEANRDD EETEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-261582998117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584441.10.0uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-93YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2I0W5D10.0A0A2I0W5D1_9ASPA; Putative zinc finger protein
STRINGGSMUA_Achr10P16000_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-95C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]