PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06753
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 646aa    MW: 69539.5 Da    PI: 5.039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06753genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.51.6e-1392566291374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav +++ + a+ l+ ++s las++g +m+++a yf+eALa++++r        l+p+++ + +s+ +   +  f+e +P+lkf+h+taN
  PEQU_06753 256 LVHALMACAEAVYQENYKVADVLVRQISVLASSQGGAMRKVAGYFAEALARKIYR--------LHPQQDCSLDSAFSDILQMHFYESCPYLKFAHFTAN 346
                 689****************************************************........77888776666666666666**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 qaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p+++  + ++l+++g++La+fA++++v+f+++ +vak+l+dle+ +L++
  PEQU_06753 347 QAILEAFAGCRRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPQPDntDDHALQQVGWKLAQFADTIHVDFDYRGFVAKSLADLEPYMLET 445
                 ****************************************************9999999**************************************87 PP

        GRAS 197 kp........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvE 286
                  +         E++a+n+v++lhrll+++++le+    vL++v+ ++P++v+v+eqea+hn+++F+erf+eal+yys++fdsle +++  + ++++ ++
  PEQU_06753 446 LSpasdgsgePEVVAINSVFELHRLLARPGALEK----VLSTVRAVKPRIVTVIEQEANHNAGPFMERFTEALHYYSTMFDSLEGGVSVGEgQQDQLMS 540
                 66688889889***********************....************************************************99998899***** PP

        GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +++lgr+i+nvvaceg+er+erhetl++Wr+r+++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  PEQU_06753 541 EVYLGRQICNVVACEGSERTERHETLNQWRARMGSAGFEPVHLGSNAFKQASMLLALFAgGDGYRVEEKEGCLTLGWHTRPLIATSAWR 629
                 ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120417.0E-3444114IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.3E-3044120No hitNo description
PROSITE profilePS5098565.823230608IPR005202Transcription factor GRAS
PfamPF035145.7E-137256629IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MKREFMESVG GRSVGGYAPA PPGMVAIGRG SLMGLEEEVD GGMDEFLAEL GYKVRSSDMA  60
DVAQKLEQLD MAIGGSAAQE DALLTHLASD TVHYNPSDLS NWLESMLSEL SAPPLPLPPL  120
AATNPRAPWS VLNSGAYTLP QAPASAHSST AFFDPADALT TTESSTVTSV DFPAPSEQRW  180
RHVVYGSEPQ MESGARDRKR MKTSSSSSSS RGGSGGGVIV QTSPTIGSLL PPASGTEVSS  240
AVPVVMVDTQ EVGIRLVHAL MACAEAVYQE NYKVADVLVR QISVLASSQG GAMRKVAGYF  300
AEALARKIYR LHPQQDCSLD SAFSDILQMH FYESCPYLKF AHFTANQAIL EAFAGCRRVH  360
VIDFSMKQGM QWPALMQALA LRPGGPPSFR LTGIGPPQPD NTDDHALQQV GWKLAQFADT  420
IHVDFDYRGF VAKSLADLEP YMLETLSPAS DGSGEPEVVA INSVFELHRL LARPGALEKV  480
LSTVRAVKPR IVTVIEQEAN HNAGPFMERF TEALHYYSTM FDSLEGGVSV GEGQQDQLMS  540
EVYLGRQICN VVACEGSERT ERHETLNQWR ARMGSAGFEP VHLGSNAFKQ ASMLLALFAG  600
GDGYRVEEKE GCLTLGWHTR PLIATSAWRV AGAADSISAS AASDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-6326362825377Protein SCARECROW
5b3h_D8e-6326362825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000250|UniProtKB:Q7G7J6}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584529.10.0DELLA protein SLR1-like
SwissprotQ2TN880.0SLR1_ORYSI; DELLA protein SLR1
TrEMBLA0A2I0VPH00.0A0A2I0VPH0_9ASPA; DELLA protein DWARF8
STRINGXP_008809806.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein