PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06471
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 928aa    MW: 108090 Da    PI: 7.4405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06471genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001747766120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C  C+k+F+r  n++ H+
  PEQU_06471 747 FSCAVCNKTFNRFNNMQMHM 766
                 89*****************9 PP
2zf-C2H212.10.00059835857123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C  Cgk+F  + + ++H +++
  PEQU_06471 835 FACRRCGKTFAVRGDWRTHEKNC 857
                 78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.64747769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055747774IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4747766IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280749769IPR007087Zinc finger, C2H2
SMARTSM00355200798830IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.73E-5821855No hitNo description
Gene3DG3DSA:3.30.160.607.1E-5822855IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035563835855IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704835855IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MKEKGCGEDL TVALSIGPPS SVGFGVAGSR GGGGPXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  660
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  720
XXXXXXXXXX XXXXXPPAEI LVGATQFSCA VCNKTFNRFN NMQMHMWGHG SQYRKGSDSL  780
RGATAKVTPA SMMRLPCYCC AEGCKNNIDH PRSRPLKDFR TLQTHYKRKH GARPFACRRC  840
GKTFAVRGDW RTHEKNCGKL WFCICGSDFK HKRSLKDHVR SFGGGHAPHI VESMLGVGEE  900
GEEEEEDDDD DGDEGEEEGK GDSGDMAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-87C2H2-like zinc finger protein