 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PEQU_06409 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 175aa MW: 20553.6 Da PI: 9.4121 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PEQU_06409 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 94.1 | 6.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA ELS+LCd+eva+ii+s++gkl e++s
PEQU_06409 9 KRIENKINRQVTFAKRRNGLLKKARELSILCDVEVALIIYSNHGKLSEFCS 59
79***********************************************96 PP
|
| 2 | K-box | 69.5 | 1e-23 | 84 | 158 | 9 | 83 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83
e++ + +q e+ Lk+ +e Lqr+qR+l+GedL+ L ++L qLe+qL+ sl +iR +K++++++q+ +lq+k
PEQU_06409 84 SRETQIQGSQMEYITLKSHVEALQRSQRNLMGEDLGLLGRNDLDQLERQLNASLAQIRFTKTQYMHDQLCDLQQK 158
578899*******************************************************************99 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 30.908 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.27E-41 | 2 | 76 | No hit | No description |
| SuperFamily | SSF55455 | 8.37E-33 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.9E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 6.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.9E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.9E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.0E-20 | 83 | 158 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 11.446 | 89 | 175 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MGRGKVQLKR IENKINRQVT FAKRRNGLLK KARELSILCD VEVALIIYSN HGKLSEFCSN 60
SSMLQTLERY EKHNNNAPEL STTSRETQIQ GSQMEYITLK SHVEALQRSQ RNLMGEDLGL 120
LGRNDLDQLE RQLNASLAQI RFTKTQYMHD QLCDLQQKVY FRIEFVELFF FLIYF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 4e-21 | 77 | 158 | 3 | 86 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 4e-21 | 77 | 158 | 3 | 86 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 4e-21 | 77 | 158 | 3 | 86 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 4e-21 | 77 | 158 | 3 | 86 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
