PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

PEQU_06360

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 875aa MW: 100247 Da PI: 6.8763

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_06360	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30	1.7e-09	2	61	30	90
FAR1 30 krtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++ C k+g+++e++ + ++ + ++a tr++C+ +++ + dg+w ++k+ + Hn +la PEQU_06360 2 SNDYICGKSGHKRESQLA-TTVKYKKADTRIDCQTMIRYAIDFDGNWTIKKFIESHNQPLA 61 5789********9999.899999******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-7	2	61	IPR004330	FAR1 DNA binding domain
Pfam	PF05183	1.5E-106	189	732	IPR007855	RNA-dependent RNA polymerase, eukaryotic-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003968	Molecular Function	RNA-directed RNA polymerase activity

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MSNDYICGKS GHKRESQLAT TVKYKKADTR IDCQTMIRYA IDFDGNWTIK KFIESHNQPL 60 AESGDKHLLR SSRKISELNT NLLKSMAGSG IRAADAFNFL ATEVGGVKNL ENEKDEDFKS 120 FQNVITPTVK TSPVLRQAAT YYTRKLYSMF EEEINEKNIY IYIYTYIYIY QISCDLSMRD 180 AVTKWMSSLV FKDGGKEEKK KNPTSSPVKC YFVRTTSCWA KDEDKSYILF NKSISEARTI 240 FMHVHTVSSL AKYMPRFSLI LSKTIKLDVD LSSVNIQVID DIPCRDEYGH VIYNDEEEDE 300 RMIHTDGTGF ISEDLAMKSP NNIFKGHCLN SNNMEPLLIQ FRLFHNGCAV KGTLLVNKQL 360 RSRTIQIRPS MIKVKADPDA IASQSFNSFE IVGTSNPPKK TCLSRSLVAL LHYGGVPKEF 420 FLELMRRAIE DLRNARYNKR SALRVALRYG EMDEFLVSRM ILCGVPLDEP YLFSRLLVLM 480 KEERKGLIQG KLPVDDCYYL MGTADPTGTL EHDEVCVILD NGQVSGDVLV YKHPGLHFGD 540 IHRLTATYIK DLEDVVGNSK YAIFFPVKGP RSLTDEIANS DLDGDMYWVC RNPQLLASFS 600 PGKPWVRPAP APKISQPKPT DFSDMELERE LFQQFLKNRF MPSYAISEAS IYWTAFMDRL 660 LTLGDDCFEE KQKLEEKMIN LVNLYYHALD APKSGLKVEI PRELKPDLFP HIMGRAKTYI 720 SKSILGLIYD EVDAVETEDV APNAVWLIPC FSEEIRDPSL SIWKKHYDDY RCEMRNALQE 780 PREDKLPENV IQKYKKLLYG AAEFEDSTRK EEEIFNDALA IYQIAYNMAK STNRVGYCSF 840 AWNVAGRALC LLHARKQEND PSILCLRSVL REVFG

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MSNDYICGKS GHKRESQLAT TVKYKKADTR IDCQTMIRYA IDFDGNWTIK KFIESHNQPL  60
AESGDKHLLR SSRKISELNT NLLKSMAGSG IRAADAFNFL ATEVGGVKNL ENEKDEDFKS  120
FQNVITPTVK TSPVLRQAAT YYTRKLYSMF EEEINEKNIY IYIYTYIYIY QISCDLSMRD  180
AVTKWMSSLV FKDGGKEEKK KNPTSSPVKC YFVRTTSCWA KDEDKSYILF NKSISEARTI  240
FMHVHTVSSL AKYMPRFSLI LSKTIKLDVD LSSVNIQVID DIPCRDEYGH VIYNDEEEDE  300
RMIHTDGTGF ISEDLAMKSP NNIFKGHCLN SNNMEPLLIQ FRLFHNGCAV KGTLLVNKQL  360
RSRTIQIRPS MIKVKADPDA IASQSFNSFE IVGTSNPPKK TCLSRSLVAL LHYGGVPKEF  420
FLELMRRAIE DLRNARYNKR SALRVALRYG EMDEFLVSRM ILCGVPLDEP YLFSRLLVLM  480
KEERKGLIQG KLPVDDCYYL MGTADPTGTL EHDEVCVILD NGQVSGDVLV YKHPGLHFGD  540
IHRLTATYIK DLEDVVGNSK YAIFFPVKGP RSLTDEIANS DLDGDMYWVC RNPQLLASFS  600
PGKPWVRPAP APKISQPKPT DFSDMELERE LFQQFLKNRF MPSYAISEAS IYWTAFMDRL  660
LTLGDDCFEE KQKLEEKMIN LVNLYYHALD APKSGLKVEI PRELKPDLFP HIMGRAKTYI  720
SKSILGLIYD EVDAVETEDV APNAVWLIPC FSEEIRDPSL SIWKKHYDDY RCEMRNALQE  780
PREDKLPENV IQKYKKLLYG AAEFEDSTRK EEEIFNDALA IYQIAYNMAK STNRVGYCSF  840
AWNVAGRALC LLHARKQEND PSILCLRSVL REVFG

Functional Description ? help Back to Top
Source	Description
UniProt	Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572059.1	0.0	probable RNA-dependent RNA polymerase 5
Swissprot	Q5QMN5	0.0	RDR3_ORYSJ; Probable RNA-dependent RNA polymerase 3
TrEMBL	A0A2I0W5L8	0.0	A0A2I0W5L8_9ASPA; RNA-dependent RNA polymerase
STRING	XP_008791522.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-08	FAR1-related sequence 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kapoor M, et al. Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice. BMC Genomics, 2008. 9: p. 451 [PMID:18826656] Shao F,Lu S Identification, molecular cloning and expression analysis of five RNA-dependent RNA polymerase genes in Salvia miltiorrhiza. PLoS ONE, 2014. 9(4): p. e95117 [PMID:24733018]