PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06231
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 344aa    MW: 39067.3 Da    PI: 6.2644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06231genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-101344132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg W++eEde+lv++++ +G g+W+++++  g
       PEQU_06231 13 RGLWSPEEDEKLVRYITTHGHGCWSAVPKQAG 44
                     788*************************9988 PP
2Myb_DNA-binding50.54.7e-1691134146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
       PEQU_06231  91 RGSFTEHEERVIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 134
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-25588IPR009057Homeodomain-like
SuperFamilySSF466892.84E-7742IPR009057Homeodomain-like
PROSITE profilePS5129410.612885IPR017930Myb domain
SMARTSM007178.4E-91287IPR001005SANT/Myb domain
PfamPF002491.3E-111385IPR001005SANT/Myb domain
CDDcd001672.37E-81685No hitNo description
SuperFamilySSF466892.04E-2171143IPR009057Homeodomain-like
PROSITE profilePS5129425.44586140IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2589141IPR009057Homeodomain-like
SMARTSM007173.6E-1590138IPR001005SANT/Myb domain
PfamPF002497.9E-1491134IPR001005SANT/Myb domain
CDDcd001672.78E-1193133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGHHCCSRQK VKRGLWSPEE DEKLVRYITT HGHGCWSAVP KQAGSFFLSL DLCVFFSGSL  60
FLFLLGILGL QRCGKSCRLR WINYLRPDLK RGSFTEHEER VIIDVHRILG NRWAQIAKHL  120
PGRTDNEVKN FWNSCIKKKL IAQGLDPKTH NLIPNTRPPY INNTSNISHF PQNTCTPFTI  180
SSNIKEMDSR KMMAPLQTSS NPLPLHDSMP TSTFQYQDPN LMMSFKEHIS HEYNISTSSS  240
SLDHANIMQI SPNEPDFMDD HCCIWASSNP LEEAILADEG KQNGERQGQQ GEVLQCMGDK  300
GDQFNEALIN GDPSFDLELM ESELMPCGSV FCGDNSIEQL QWEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29131407108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574002.10.0transcription factor MYB26-like isoform X1
TrEMBLA0A2I0VEX80.0A0A2I0VEX8_9ASPA; Transcription factor MYB86
STRINGXP_008798713.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-76myb domain protein 67