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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 269aa MW: 30461 Da PI: 9.9681 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.5e-06 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PEQU_06177 30 FVCEICNKGFQRDQNLQLHRRGH 52 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.62E-8 | 29 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-6 | 29 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 3.7E-5 | 30 | 52 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 30 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.62E-8 | 99 | 124 | No hit | No description |
SMART | SM00355 | 220 | 104 | 124 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
KKKRNLPGNP DPEAEVIALS PKSLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 60 RTSKEVRKKV YICPEVTCVH HDASRALGDL TGIKKHFKHG EKKWKCDKCA KKYAVQSDWK 120 AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITTNPLMN QNPVLFPAPP 180 PPPINPPPQF PHFIKSATPE TNQNLQDQLN TLKKETQNPP SWLNYHDFPF SLYATTISQE 240 NAIPHHLISA PAPHMSATAL LQKAAQMGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-36 | 100 | 172 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-36 | 100 | 172 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 68 | KLKQRTSKEVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020573780.1 | 0.0 | LOW QUALITY PROTEIN: protein indeterminate-domain 11 | ||||
Swissprot | Q9SCQ6 | 1e-110 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2I0WKX6 | 1e-142 | A0A2I0WKX6_9ASPA; Zinc finger protein MAGPIE | ||||
STRING | XP_008793218.1 | 1e-130 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 5e-94 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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