PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 270aa MW: 29223 Da PI: 5.0461

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_05614	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	210.8	7.4e-65	1	246	120	374
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeL.rvkpgEalaVnlvlqlhrlld 215 +qGlQWp L++ LasRp++ s+RiTg+g+ +++ le+tg+rLa+fA++l++pf+f++l + +++dl ++ + + +p Ea++V++ h l+d PEQU_05614 1 MQGLQWPGLFHILASRPRPIESIRITGIGP----DSDLLEATGRRLADFAASLNLPFQFTPL-EGKIADLatDFTPFcHRNPAEATVVHWTQ--HCLYD 92 69**************************....9**********************7.5566666334555534555****99..77777 PP GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313 ++s +++ sl+P++++vveq++ h +++ Fl rf+eal+yysalfd++ + + eer vEr +lg ei+n+va g +r+ + + +e PEQU_05614 93 VTGSDIA----AAQFLSSLRPRLLTVVEQDLGHgSGGGFLGRFVEALHYYSALFDAIGDG-GGGGEERWEVERGVLGGEIKNIVAVGGPKRTGEVK-VE 185 7777777....66777899**********8888****************877.6888**********************998887.9 PP GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +W + l+++GF+pv+l + a+qa+lll +v+++gy++ ee g l lgWkd +L+++SaWr PEQU_05614 186 RWGDELRRVGFRPVSLAGSPAAQASLLLGMVPWKGYTLAEEGGRLKLGWKDLSLLTASAWR 246 ************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.502	1	226	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-62	1	246	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MQGLQWPGLF HILASRPRPI ESIRITGIGP DSDLLEATGR RLADFAASLN LPFQFTPLEG 60 KIADLATDFT PFCHRNPAEA TVVHWTQHCL YDVTGSDIAA AQFLSSLRPR LLTVVEQDLG 120 HGSGGGFLGR FVEALHYYSA LFDAIGDGGG GGEERWEVER GVLGGEIKNI VAVGGPKRTG 180 EVKVERWGDE LRRVGFRPVS LAGSPAAQAS LLLGMVPWKG YTLAEEGGRL KLGWKDLSLL 240 TASAWRPANI AGKEEDGGEE EWDRSEGISF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-93	1	247	138	380	Protein SCARECROW
5b3h_A	4e-93	1	247	137	379	Protein SCARECROW
5b3h_D	4e-93	1	247	137	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020589549.1	0.0	scarecrow-like protein 23
Swissprot	Q9FHZ1	1e-105	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	A0A2I0WSE8	1e-164	A0A2I0WSE8_9ASPA; Scarecrow-like protein 23
STRING	MLOC_62589.1	1e-123	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1371	38	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	3e-91	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]