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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_05586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 15935.8 Da PI: 11.3383 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.1e-20 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp g++ r++lg+f+tae Aa+a++aa+++++g PEQU_05586 17 TQFRGVRKRP-WGRYAAEIRDP---GRKIRVWLGTFDTAEAAARAYDAAAREFRG 67 579*******.**********8...556************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.86E-16 | 17 | 74 | No hit | No description |
SMART | SM00380 | 6.2E-36 | 18 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 18 | 76 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-31 | 18 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-13 | 18 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 18 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MPPRSKLHCA AAAEKETQFR GVRKRPWGRY AAEIRDPGRK IRVWLGTFDT AEAAARAYDA 60 AAREFRGSRA KTNFSFSDAE HESSGAVPFD LNRGGDARFM FRAFRNEMAA AAQPLYFFGN 120 FRHSGGARFL SRRDGSIGHV SSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-19 | 15 | 76 | 2 | 64 | ATERF1 |
3gcc_A | 8e-19 | 15 | 76 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589649.1 | 1e-99 | ethylene-responsive transcription factor 8-like | ||||
Swissprot | Q9FE67 | 2e-31 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | A0A2I0WJT5 | 6e-48 | A0A2I0WJT5_9ASPA; Ethylene-responsive transcription factor 9 | ||||
STRING | GSMUA_Achr8P15830_001 | 6e-33 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 9e-19 | erf domain protein 9 |
Publications ? help Back to Top | |||
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