PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05030
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 685aa    MW: 74872.6 Da    PI: 6.0186
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05030genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07276296526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  PEQU_05030 276 PCPDFRK-GACRRGDMCEYAHG 296
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.55E-1518127IPR020683Ankyrin repeat-containing domain
CDDcd002041.51E-1319130No hitNo description
PfamPF127964.4E-1048121IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.54752127IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-1552131IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0045282IPR002110Ankyrin repeat
PRINTSPR014158.5E-55368IPR002110Ankyrin repeat
PROSITE profilePS5008811.96887122IPR002110Ankyrin repeat
SMARTSM002480.001587119IPR002110Ankyrin repeat
PRINTSPR014158.5E-5106120IPR002110Ankyrin repeat
SMARTSM003564.0E-6271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582276298IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035664306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MNQLSVVIED TFASVLELAA NNDLDGFKRF VDRDPLAIDE VGDWYGRKKV FEQRTPLMVA  60
ATYGSLEVLE LILNLSSENV NRYCGPDKTT ALHCAASGGS VNAVEAVKVL LSAGADPNIV  120
DAMGHRPADV ITVPCKKSNG KVTLEELLGS SDGVVREIHR QDLWVVSSSS SNSNSPSLSS  180
SAEDQGSPSS DSSSSPNDVK YEELPILPEK KEYPVDPSLP DIKNVAYSTD EFRMFSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTNCAR RVCFFAHTNE ELRPLYMSTG SAVPSPRTSA STAMEMAAMG  360
LVPSSPSSAS AVMPSFTPPL SPSANGISHS SMNWPQPNVP ALHLPGSNLQ SSRLRSSLNA  420
RDIPLDDYYN QELEAHQLMN DLYISRFGSS AVNRTTRSKN LNGSNLDDLF SAEISSSPRY  480
NSEQGALFSP SHKTAIFNQF QQQQQNLLSP INTGMFSPKT LDQQHPGHSS LLQVSLGLLS  540
PGRMSPRSME PVSPLSSSRH HATFAQLEKQ QQQQTLRSLS SRDLVAGAPA MAGSLLSSSL  600
SKWGSPSGTL DWGMNGDELG RLKRSSSFEL PSNGEEPDVS WVHSLVKETT PEKPSSMKSL  660
VGEADAFGVE IGGFDHASVI DDWLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590577.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2I0W3210.0A0A2I0W321_9ASPA; Zinc finger CCCH domain-containing protein 24
STRINGXP_008778438.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]