PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

SBP

Protein Properties

Length: 473aa MW: 51632.9 Da PI: 7.581

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_04780	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	7.7e-41	172	248	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dl ak+yhr+h+vCe hsk+p+v+++g+e+rfCqqCsrfh+lsefD++krsCr+rL++hn+rrrk+q+ PEQU_04780 172 CQVEGCNIDLIGAKDYHRKHRVCENHSKSPKVIIAGQERRFCQQCSRFHDLSEFDQKKRSCRKRLSEHNSRRRKPQP 248 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-33	164	233	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.684	169	246	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.76E-38	170	251	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-31	172	245	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MDWNLKAPLQ WEWENLALFS GKESEITKFT TQAEWRTEDG GVISNGSVYS SGSGTSSGSD 60 LGNGSSRSSV SASVGSSSKV GVFTSELNFE ALEGLHQNPN KNNEPVTGED AETSPAIVRR 120 SGAGEPQLGL KLGKRTYFED FGRANVKTSI TQEDTSVKKA RVSHQATQNT YCQVEGCNID 180 LIGAKDYHRK HRVCENHSKS PKVIIAGQER RFCQQCSRFH DLSEFDQKKR SCRKRLSEHN 240 SRRRKPQPEA ISFNSSVLPS SFYANGQQMN FFLSRGPVND TRPSASTLWE KSSGFSLSTS 300 EGTWPKPTKA GVDGALHLPF LDFSDNFPTS HHGFNRTMPF KGTTAEVLNQ GLEASASASN 360 FNGAPPDLRS ALSLLSNDSC GPCNAGQSHM IIAKTNPTAA TASHPSPVQA SNSLLECWQD 420 DRSLTEQALA FNFSSNGSQF QDFHLSKAPF DSPLFEGNQV FSKSDGHFLG FKT

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MDWNLKAPLQ WEWENLALFS GKESEITKFT TQAEWRTEDG GVISNGSVYS SGSGTSSGSD  60
LGNGSSRSSV SASVGSSSKV GVFTSELNFE ALEGLHQNPN KNNEPVTGED AETSPAIVRR  120
SGAGEPQLGL KLGKRTYFED FGRANVKTSI TQEDTSVKKA RVSHQATQNT YCQVEGCNID  180
LIGAKDYHRK HRVCENHSKS PKVIIAGQER RFCQQCSRFH DLSEFDQKKR SCRKRLSEHN  240
SRRRKPQPEA ISFNSSVLPS SFYANGQQMN FFLSRGPVND TRPSASTLWE KSSGFSLSTS  300
EGTWPKPTKA GVDGALHLPF LDFSDNFPTS HHGFNRTMPF KGTTAEVLNQ GLEASASASN  360
FNGAPPDLRS ALSLLSNDSC GPCNAGQSHM IIAKTNPTAA TASHPSPVQA SNSLLECWQD  420
DRSLTEQALA FNFSSNGSQF QDFHLSKAPF DSPLFEGNQV FSKSDGHFLG FKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-26	172	245	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	244	KKRSCRKRLSEHNSRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578542.1	0.0	squamosa promoter-binding-like protein 12 isoform X2
Swissprot	A2YGR5	1e-100	SPL12_ORYSI; Squamosa promoter-binding-like protein 12
Swissprot	Q5Z818	1e-100	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2I0W9G5	0.0	A0A2I0W9G5_9ASPA; Squamosa promoter-binding-like protein 12
STRING	XP_008809089.1	1e-149	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3697	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	4e-61	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]