PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PEQU_04684

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

CO-like

Protein Properties

Length: 348aa MW: 37255.9 Da PI: 6.35

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_04684	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.8e-07	17	65	3	42
zf-B_box 3 erkCpeHeeke...lqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ ++ ++lfC+ + +lC +C H+ H++v+l PEQU_04684 17 ARSCDACKGATvasAILFCRADAAFLCGTCDARVHSAnklasrHERVSL 65 578***533344*******************66889999998875 PP
2	zf-B_box	23.8	9.5e-08	64	107	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ ++ C+ + lC +C +H+ H ++p PEQU_04684 64 SLCAVCEQAPAAVTCKADAAALCSSCDADIHSAnplasrHHRIP 107 68*****************************6688999966665 PP
3	CCT	69.7	7.6e-24	272	315	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ PEQU_04684 272 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 315 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	9.1E-13	15	65	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.783	15	65	IPR000315	B-box-type zinc finger
CDD	cd00021	1.52E-5	18	65	No hit	No description
Pfam	PF00643	8.0E-6	18	65	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.48	61	108	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.0E-6	64	108	IPR000315	B-box-type zinc finger
CDD	cd00021	7.21E-7	65	108	No hit	No description
SMART	SM00336	2.8E-7	66	108	IPR000315	B-box-type zinc finger
Pfam	PF06203	6.7E-18	272	314	IPR010402	CCT domain
PROSITE profile	PS51017	16.906	272	314	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGFAGAESPG TFWSLRARSC DACKGATVAS AILFCRADAA FLCGTCDARV HSANKLASRH 60 ERVSLCAVCE QAPAAVTCKA DAAALCSSCD ADIHSANPLA SRHHRIPIVP FFDSPSANSS 120 AAGDGDPDPE SFFSGDAEAE ASWVLQDPPK EAQLEMPKSA NCFFSELNPF LDLEYASSVD 180 AGMYQSDSVV PAGAGIPASF MLDFAKSKPA YSGYNISPSV SFYRDCRINF ICSMSSSEFG 240 VVPDGEGCAM ADVSTCGGGR SSSVTAVSMM DREARVMRYR EKRKNRRFEK TIRYASRKAY 300 AETRPRIKGR FAKRTEMEAE FDRIYLSAAA ATAAFMAADP GFGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGFAGAESPG TFWSLRARSC DACKGATVAS AILFCRADAA FLCGTCDARV HSANKLASRH  60
ERVSLCAVCE QAPAAVTCKA DAAALCSSCD ADIHSANPLA SRHHRIPIVP FFDSPSANSS  120
AAGDGDPDPE SFFSGDAEAE ASWVLQDPPK EAQLEMPKSA NCFFSELNPF LDLEYASSVD  180
AGMYQSDSVV PAGAGIPASF MLDFAKSKPA YSGYNISPSV SFYRDCRINF ICSMSSSEFG  240
VVPDGEGCAM ADVSTCGGGR SSSVTAVSMM DREARVMRYR EKRKNRRFEK TIRYASRKAY  300
AETRPRIKGR FAKRTEMEAE FDRIYLSAAA ATAAFMAADP GFGVVPSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM439640	0.0	HM439640.1 Phalaenopsis hybrid cultivar CONSTANS-like 2 protein (COL2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578720.1	0.0	zinc finger protein CONSTANS-LIKE 3-like
Swissprot	Q9FHH8	2e-83	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	K9K3D1	0.0	K9K3D1_9ASPA; CONSTANS-like 2 protein
STRING	XP_008789696.1	1e-118	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-72	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]