PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_04577

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

TALE

Protein Properties

Length: 612aa MW: 68330.8 Da PI: 5.4547

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_04577	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	1.9e-09	399	436	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ L+k++gLt +qV++WF N R + PEQU_04577 399 FEHflHPYPNDSEKLMLSKQTGLTRSQVSNWFINARVR 436 665559******************************88 PP
2	BELL	121.3	4e-39	262	333	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLl +l+eVd+rYkqy++q+q+v+ssF+a+ g ++akpYt+lAl++iSrhFr+L+dai++q+ PEQU_04577 262 ERQELQNKMTKLLAMLDEVDRRYKQYYHQMQIVVSSFDAISGPDAAKPYTALALQTISRHFRSLRDAISDQL 333 79*******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.8E-58	184	331	IPR006563	POX domain
Pfam	PF07526	1.6E-49	190	330	IPR006563	POX domain
PROSITE profile	PS50071	12.244	377	440	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.2E-28	379	452	IPR009057	Homeodomain-like
SMART	SM00389	6.7E-10	380	444	IPR001356	Homeobox domain
CDD	cd00086	1.17E-12	380	441	No hit	No description
SuperFamily	SSF46689	3.68E-17	381	446	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-17	397	436	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MATFYPSSNN QRDSMANFYL RDPTGPPMYP ESAVNPNMVY LNFSSGPYSE TLAENIQSEQ 60 NSIGFTDLVA PHLGETAYNS WKDGRNEMLF MQANGESMDD EGVHLGLQTQ LSMLNENNLS 120 LQQGLSLSLG TQIPVQTYKY QPTGSDVPIL SSSHQSSSEN GEAYRNDNSR SRILNVNAIS 180 YGLSNFLTII PNSKYLKTAQ QLLDEVVNVQ KALKKKGDCT QSGIASGKPA CRDNDGESKS 240 GGSPSNHPGS TANSSGELSP SERQELQNKM TKLLAMLDEV DRRYKQYYHQ MQIVVSSFDA 300 ISGPDAAKPY TALALQTISR HFRSLRDAIS DQLRCVRKML GELDSSTNKG CGISRLRYID 360 QQLRQQRAIQ QLGMMPQHAW RPQRGLPENS VTILRAWLFE HFLHPYPNDS EKLMLSKQTG 420 LTRSQVSNWF INARVRLWKP MVEDMYKEEF GEAEMDSNSS SDNATKFRDE FHAADAQDDQ 480 PSSTGDRCQI KQSSNEHSPN IVPENNMACT DPAFHIELQD HRHQNSANIS LLHDAIRHAD 540 ADGNSRFITY PMTELARYAN GVSLTLGLQH CDGDLQDAED QQGFLPVRGE DIYNTAPLLG 600 FGSSNLLHDY VA

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MATFYPSSNN QRDSMANFYL RDPTGPPMYP ESAVNPNMVY LNFSSGPYSE TLAENIQSEQ  60
NSIGFTDLVA PHLGETAYNS WKDGRNEMLF MQANGESMDD EGVHLGLQTQ LSMLNENNLS  120
LQQGLSLSLG TQIPVQTYKY QPTGSDVPIL SSSHQSSSEN GEAYRNDNSR SRILNVNAIS  180
YGLSNFLTII PNSKYLKTAQ QLLDEVVNVQ KALKKKGDCT QSGIASGKPA CRDNDGESKS  240
GGSPSNHPGS TANSSGELSP SERQELQNKM TKLLAMLDEV DRRYKQYYHQ MQIVVSSFDA  300
ISGPDAAKPY TALALQTISR HFRSLRDAIS DQLRCVRKML GELDSSTNKG CGISRLRYID  360
QQLRQQRAIQ QLGMMPQHAW RPQRGLPENS VTILRAWLFE HFLHPYPNDS EKLMLSKQTG  420
LTRSQVSNWF INARVRLWKP MVEDMYKEEF GEAEMDSNSS SDNATKFRDE FHAADAQDDQ  480
PSSTGDRCQI KQSSNEHSPN IVPENNMACT DPAFHIELQD HRHQNSANIS LLHDAIRHAD  540
ADGNSRFITY PMTELARYAN GVSLTLGLQH CDGDLQDAED QQGFLPVRGE DIYNTAPLLG  600
FGSSNLLHDY VA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	7e-16	386	443	1	58	Homeobox protein Meis1
4xrs_B	7e-16	386	443	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578415.1	0.0	BEL1-like homeodomain protein 7
Swissprot	O65685	1e-119	BLH6_ARATH; BEL1-like homeodomain protein 6
Swissprot	Q9SIW1	1e-120	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A2I0VQ00	0.0	A0A2I0VQ00_9ASPA; BEL1-like homeodomain protein 6
STRING	XP_008812787.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP901	38	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-113	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]