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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_04547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 369aa MW: 40110.4 Da PI: 4.6605 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+tae+Aa+a+++a+ l+g PEQU_04547 32 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEDAARAYDEAACLLRG 81 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.15E-31 | 31 | 88 | No hit | No description |
SuperFamily | SSF54171 | 3.66E-19 | 32 | 90 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-27 | 32 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.388 | 32 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-13 | 32 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-8 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-8 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
NPTMGSKRKT TSSEDPDKSS SPSTATHRAR KRFVGVRQRP SGRWVAEIKD TIQKIRVWLG 60 TFDTAEDAAR AYDEAACLLR GANTRTNFWP STTTHALPSR ITTLLLHRLK SRSPVSAIAD 120 ETQAQSHGLL TPAPFENHPQ PQPLVKEEEE EEESGNDEIP FEYFLNEPCD STDVVSGEVD 180 EEGEEKTGVD LNEMDFDQFG GSYYSPFEIA EGMGEDEWSG GDDGASMLGA AMRRMKYERK 240 ISASLYAFNG ISECLKLKLG GRMGGGGGGG GEAMSEQLYG LSKACKRQRV EEIAERLEVK 300 NEALENDYST ILHSSSNSSS SPSYSSYMKK PPAAAAAAAA AALNTEVELS IWSSLDLSPI 360 CVASNAVKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 31 | 88 | 4 | 62 | ATERF1 |
3gcc_A | 2e-13 | 31 | 88 | 4 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 259 | 267 | GGRMGGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020578725.1 | 0.0 | ethylene-responsive transcription factor ERF056-like | ||||
TrEMBL | A0A2I0VPY4 | 1e-148 | A0A2I0VPY4_9ASPA; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | XP_008230991.1 | 1e-74 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-22 | related to AP2 11 |