PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_04524

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 280aa MW: 31114.6 Da PI: 7.6699

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_04524	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	257	278	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C+++F+++ +L+ H H PEQU_04524 257 VCPVCNETFRDPVLLVEHVEEH 278 7*****************9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	2.35E-13	7	51	No hit	No description
Gene3D	G3DSA:4.10.1110.10	9.6E-12	9	49	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	8.23	10	59	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	3.7E-12	13	50	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0063	13	52	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	7.139	57	156	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.2E-8	91	151	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	3.66E-7	93	145	No hit	No description
Pfam	PF01428	4.9E-7	101	141	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.09	101	142	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.61	219	242	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.037	219	247	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	221	242	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.85	256	280	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.1	256	278	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	258	279	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSTTALADIG KRCGVEECKL IDFLPFNCDR CDQVFCLRHR SYTKHPCPVA NQIDMTLLIC 60 PLCAQGVRLL PNEDPDITWD THVNCDCDPS TYQKPSKKKL CPATECNETL FFSNTIRCKN 120 CNQDHCLRHK FAANHNCTGP KKPDSSFPFL DVLRKSQKNI STPSRTPNGS AKLSSNLLNA 180 ASSIRASAEA GMQRLSIATK KVLRKAKDGM AQGRGELAEQ CLQCQSRFGN VNALIEHVEK 240 VHEDSVPQGL NMAAFDVCPV CNETFRDPVL LVEHVEEHHG

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578654.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
Swissprot	Q0D5B9	1e-113	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A2I0VPY8	1e-161	A0A2I0VPY8_9ASPA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRING	Pavir.J03938.1.p	1e-117	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-86	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]