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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_04522 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | B3 | ||||||||
Protein Properties | Length: 192aa MW: 22590.2 Da PI: 5.328 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.5 | 1.3e-14 | 32 | 123 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+kv+ + +++ + +p kf +++ ++ + + l ++g+sW++ l y+ s +++ GWk+Fv++n+++eg +++F++ g+s+f +v+vf+k PEQU_04522 32 FVKVM--NGDFTH-KMEFPQKFSKNF-RVELID-VVELVAPNGESWDIDL-YSTFSTLFYFNCGWKDFVEENEIEEGYILLFEYAGDSSF--RVRVFDK 122 55666..444555.4999****9555.444443.7999************.7777778********************************..9***998 PP S CS B3 100 s 100 s PEQU_04522 123 S 123 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.42E-21 | 25 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 26 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.634 | 29 | 123 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.08E-15 | 31 | 121 | No hit | No description |
SMART | SM01019 | 1.6E-10 | 32 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-13 | 32 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
VACRSMKNRC WSCKKWEQHF YWDHFQESNY RFVKVMNGDF THKMEFPQKF SKNFRVELID 60 VVELVAPNGE SWDIDLYSTF STLFYFNCGW KDFVEENEIE EGYILLFEYA GDSSFRVRVF 120 DKSGRSAAVS NPEGSSGVKQ KNEDSTLQNI QYSHLLRGAA CKELIEDEEH GAGNSCVNFY 180 FYTHYTRIFN IT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020695843.1 | 1e-63 | B3 domain-containing protein Os03g0622100-like | ||||
Refseq | XP_028556273.1 | 1e-63 | B3 domain-containing protein Os03g0622100-like | ||||
TrEMBL | A0A2I0VPW3 | 2e-62 | A0A2I0VPW3_9ASPA; B3 domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-19 | B3 family protein |