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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_04108 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C3H | ||||||||
Protein Properties | Length: 304aa MW: 31482.6 Da PI: 9.915 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.6e-09 | 107 | 132 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ PEQU_04108 107 KTRLCNKYNTPEGCKFGDKCHFAHGE 132 8***********************96 PP | |||||||
2 | zf-CCCH | 30.5 | 6.2e-10 | 271 | 295 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C++f + G C +G+rC+FaHg PEQU_04108 271 FKTKMCDNFTK-GSCTFGERCHFAHG 295 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.8 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.089 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 40 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-7 | 41 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-14 | 103 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.021 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-8 | 106 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-6 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 4.86E-15 | 166 | 244 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 8.7E-12 | 172 | 242 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.236 | 173 | 237 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.2E-15 | 173 | 241 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 4.7E-11 | 175 | 238 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.75E-13 | 177 | 237 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-15 | 269 | 301 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-8 | 270 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.798 | 270 | 297 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-6 | 270 | 296 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 271 | 295 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MYANDAGRKR GRPDAVIGNG TFSGFKRSKE TESNQHGLGS KSKPCTKFFS TAGCPFGEGC 60 HFLHFVPGGY NTVAQITNGG ITAFTAASRN TIAPSPISDG PPANAAKTRL CNKYNTPEGC 120 KFGDKCHFAH GERELNRPLH SAPMAPPMGG RFGSRLEPPP PAGLGAAASF GASATAKISV 180 DASLAGAIIG KGGVNTKQIC RLTGARLFIR EHESDPNLRN IELEGTFDQI KQATGLVREL 240 IVNISTSAAP APVKAAAGLG AGGGGGSGSN FKTKMCDNFT KGSCTFGERC HFAHGAAELR 300 KATA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589500.1 | 0.0 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7F8R0 | 1e-117 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2H3YXX6 | 1e-149 | A0A2H3YXX6_PHODC; zinc finger CCCH domain-containing protein 31-like | ||||
STRING | XP_008805470.1 | 1e-150 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 4e-62 | C3H family protein |