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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_03642 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 136aa MW: 15077.8 Da PI: 5.2724 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r +lg+f++ eAa+a++ a+++l+g PEQU_03642 13 TYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDSSLEAARAYDLAARSLYG 62 69****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.95E-26 | 12 | 71 | No hit | No description |
SuperFamily | SSF54171 | 3.2E-21 | 13 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-29 | 13 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.786 | 13 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-14 | 13 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-33 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MKGKGGPENP FCTYRGVRQR TWGKWVAEIR EPNRGARLWL GTFDSSLEAA RAYDLAARSL 60 YGDCARLNLP HEFPSAAAKQ QPGRSSRSAA GAGLDDLDEY VMSLPKAEDF GLDAFREIRM 120 EVDGDFMETA QLSWGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-19 | 14 | 73 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020599008.1 | 2e-96 | dehydration-responsive element-binding protein 2C-like | ||||
Swissprot | Q84ZA1 | 7e-42 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A2I0VUS0 | 4e-57 | A0A2I0VUS0_9ASPA; Dehydration-responsive element-binding protein 2C | ||||
STRING | GSMUA_AchrUn_randomP08690_001 | 4e-45 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 4e-37 | ERF family protein |
Publications ? help Back to Top | |||
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