PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03642
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 136aa    MW: 15077.8 Da    PI: 5.2724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03642genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-191362255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr++  +g+WvAeIr+p   + r +r +lg+f++  eAa+a++ a+++l+g
  PEQU_03642 13 TYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDSSLEAARAYDLAARSLYG 62
                69****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.95E-261271No hitNo description
SuperFamilySSF541713.2E-211372IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-291371IPR001471AP2/ERF domain
PROSITE profilePS5103221.7861370IPR001471AP2/ERF domain
PfamPF008474.8E-141362IPR001471AP2/ERF domain
SMARTSM003803.5E-331376IPR001471AP2/ERF domain
PRINTSPR003674.5E-101425IPR001471AP2/ERF domain
PRINTSPR003674.5E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MKGKGGPENP FCTYRGVRQR TWGKWVAEIR EPNRGARLWL GTFDSSLEAA RAYDLAARSL  60
YGDCARLNLP HEFPSAAAKQ QPGRSSRSAA GAGLDDLDEY VMSLPKAEDF GLDAFREIRM  120
EVDGDFMETA QLSWGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1914731575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599008.12e-96dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA17e-42DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A2I0VUS04e-57A0A2I0VUS0_9ASPA; Dehydration-responsive element-binding protein 2C
STRINGGSMUA_AchrUn_randomP08690_0014e-45(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-37ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]