PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03277
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 408aa    MW: 45379.4 Da    PI: 6.4004
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03277genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-06183204223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C +Cgk F+r  nL+ H+r H
  PEQU_03277 183 FCMICGKGFKRDANLRMHMRGH 204
                 5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.23E-5180207No hitNo description
PROSITE profilePS5015711.697182209IPR007087Zinc finger, C2H2
SMARTSM003550.0057182204IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5183208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SMARTSM0035581231264IPR015880Zinc finger, C2H2-like
SMARTSM0035532269291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLNNLSFLEQ KIHQVQDIVH SIANQDGQFP NHTNELAVQQ QLVTADLTCI IIQLISTAGT  60
LLPSMKNSLI STDAMINPSG CITSTPSLCF NGNMQQKETI LSQSTKASEF DELIKGLTDC  120
GTEGDELIKC LKNSRTEVAE TAVIEDQDLK DVEESVEGEN LIPGSYEVFQ LEKEEILAPH  180
THFCMICGKG FKRDANLRMH MRGHGDEYKS AAALAKPTKE LNSELMPIRR YSCPFVGCKR  240
NKDHKKFLPL KTILCVKNHY KRSHCDKKYT CSRCHSKKFS VLADLKTHEK HCGRDKWLCS  300
CGTTFSRKDK LFGHVALFQG HTPALAMEES KTLGGLLDHG NDDEEKAIVG RSSLDDANVL  360
DVREDGLFSL MNFDSYNFGG FDEFSRPGFN SSRGSFCFDA SGSDNGAL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596279.10.0zinc finger protein STOP1 homolog
RefseqXP_020596286.10.0zinc finger protein STOP1 homolog
SwissprotQ943I61e-167STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2I0WE890.0A0A2I0WE89_9ASPA; Zinc finger protein STOP1 like
STRINGXP_008795575.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-155C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]