PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 408aa MW: 45379.4 Da PI: 6.4004

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_03277	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	2e-06	183	204	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H PEQU_03277 183 FCMICGKGFKRDANLRMHMRGH 204 5*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.23E-5	180	207	No hit	No description
PROSITE profile	PS50157	11.697	182	209	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0057	182	204	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.7E-5	183	208	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	184	204	IPR007087	Zinc finger, C2H2
SMART	SM00355	81	231	264	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	32	269	291	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MLNNLSFLEQ KIHQVQDIVH SIANQDGQFP NHTNELAVQQ QLVTADLTCI IIQLISTAGT 60 LLPSMKNSLI STDAMINPSG CITSTPSLCF NGNMQQKETI LSQSTKASEF DELIKGLTDC 120 GTEGDELIKC LKNSRTEVAE TAVIEDQDLK DVEESVEGEN LIPGSYEVFQ LEKEEILAPH 180 THFCMICGKG FKRDANLRMH MRGHGDEYKS AAALAKPTKE LNSELMPIRR YSCPFVGCKR 240 NKDHKKFLPL KTILCVKNHY KRSHCDKKYT CSRCHSKKFS VLADLKTHEK HCGRDKWLCS 300 CGTTFSRKDK LFGHVALFQG HTPALAMEES KTLGGLLDHG NDDEEKAIVG RSSLDDANVL 360 DVREDGLFSL MNFDSYNFGG FDEFSRPGFN SSRGSFCFDA SGSDNGAL

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MLNNLSFLEQ KIHQVQDIVH SIANQDGQFP NHTNELAVQQ QLVTADLTCI IIQLISTAGT  60
LLPSMKNSLI STDAMINPSG CITSTPSLCF NGNMQQKETI LSQSTKASEF DELIKGLTDC  120
GTEGDELIKC LKNSRTEVAE TAVIEDQDLK DVEESVEGEN LIPGSYEVFQ LEKEEILAPH  180
THFCMICGKG FKRDANLRMH MRGHGDEYKS AAALAKPTKE LNSELMPIRR YSCPFVGCKR  240
NKDHKKFLPL KTILCVKNHY KRSHCDKKYT CSRCHSKKFS VLADLKTHEK HCGRDKWLCS  300
CGTTFSRKDK LFGHVALFQG HTPALAMEES KTLGGLLDHG NDDEEKAIVG RSSLDDANVL  360
DVREDGLFSL MNFDSYNFGG FDEFSRPGFN SSRGSFCFDA SGSDNGAL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596279.1	0.0	zinc finger protein STOP1 homolog
Refseq	XP_020596286.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	1e-167	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2I0WE89	0.0	A0A2I0WE89_9ASPA; Zinc finger protein STOP1 like
STRING	XP_008795575.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-155	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]