PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_03267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21163.1 Da PI: 7.6603 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 5.9e-21 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g PEQU_03267 21 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 70 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-14 | 21 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.752 | 21 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-33 | 21 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-23 | 21 | 79 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-37 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-12 | 22 | 33 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.31E-15 | 29 | 80 | No hit | No description |
PRINTS | PR00367 | 3.2E-12 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
PSTHEQTPSS QTEIEGQPRR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FDTAEAAARA 60 YDEAALRFRG SRAKLNFPEN ARLQPPEIDS SGQSITPDLS ASRDYLEYSR LLRGDGQYAN 120 LEYSRLNSAS PVSSSSTSSS SSSVLNRFYG MGGEEEQRMR YLGQSEIWGT AFPANKWEDS 180 GELPPPSSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-24 | 20 | 78 | 4 | 63 | ATERF1 |
3gcc_A | 3e-24 | 20 | 78 | 4 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596270.1 | 1e-135 | ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A2I0W5X5 | 1e-77 | A0A2I0W5X5_9ASPA; Ethylene-responsive transcription factor ERF112 | ||||
STRING | GSMUA_Achr8P08000_001 | 3e-43 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9894 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-16 | ethylene response factor 110 |