PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_03229

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 668aa MW: 73347.1 Da PI: 5.9904

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_03229	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	294.9	2.1e-90	295	667	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalklfsevsPi 90 lv++Ll++Ae+v+sg+l a+ +Larl+++ s g+p+ R a+yf+eAL+ ++ ++ + + p + ++ + ++ +l+a+k+fsevsPi PEQU_03229 295 LVDQLLKAAEFVESGNLVGAHGILARLNHQlPSAVGKPFLRSAFYFKEALQLLVNYVNPQAATSSPHHRRTPFTsplaspldVVLKLSAYKAFSEVSPI 393 6899**********************9989999***************998888777765555554445788898899999******** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 ++f+++ta q++le++ +++++HiiDfdi+ G+QW +++q+L++R+ + l+iT+++sp +++ el+ t+e+L++fA+ l++pfe+n+ +++ PEQU_03229 394 MQFTNFTATQTLLEELGTSDCIHIIDFDIGVGGQWSSFMQELSQRRsssSAISLLKITAFVSPYAFHPLELHLTKENLSHFASDLNIPFEINIANIESF 492 ***************************************999543334589**********************************766677 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 + e+ L+ ++Ea+aVnl + + + s +++L+l+k+l Pk+v+ ++q +d+++ F + fl+al+ + +l+ds++a +++++ +k+ PEQU_03229 493 DPAEILVLSAGSNEAIAVNLPVGAWQGH----S----FPTLLRLIKQLLPKIVISMDQGCDRGDLVFSHYFLHALQSCIVLLDSFDAA-GTDQDVTNKI 582 777777777777*****9777665....3....556*****************************************999.8999** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Er++l+++i+n+v ++ e+ Wr + +aGF p ++s+++++qa++ll++v+++g+ ve+++++l+l+W++ +L svSaWr PEQU_03229 583 ERFVLQPRIENCVLGRHCT----AEKTLPWRTLFASAGFVPFQFSNFTETQAECLLKRVQVRGFYVEKRQAALYLYWQRGELASVSAWR 667 **********99998....89999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.209	269	647	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-88	295	667	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
VILEPKSVLD QRSPSPPTST STLSSSLGGG AVRFTDTAGV AAGAAVSDKP AIKWPNAAGE 60 EGGRKEEWAP ELHPVPASLE MDWDTMLTES AASPGQEQTF LRWIMGDPDD PAKQQHLMLS 120 SPTPMPEFDT GNHGLGFGLI DPGFGFEHNA SASSISSHPT PPQLDAAPGE KNHIFSTSLP 180 FSIPPAMFFQ EHTEEKPQFF GSNLLLNQFQ QNQVPANPAF FVPLPSFSSS TENLFPNSHP 240 GAGSELFVRP QPNQNLNIPQ LHPVPYHLQH RPLKPKSLSA GDEAMAIQQQ HQQALVDQLL 300 KAAEFVESGN LVGAHGILAR LNHQLPSAVG KPFLRSAFYF KEALQLLVNY VNPQAATSSP 360 HHRRTPFTSP LASPLDVVLK LSAYKAFSEV SPIMQFTNFT ATQTLLEELG TSDCIHIIDF 420 DIGVGGQWSS FMQELSQRRS SSSAISLLKI TAFVSPYAFH PLELHLTKEN LSHFASDLNI 480 PFEINIANIE SFDPAEILVL SAGSNEAIAV NLPVGAWQGH SFPTLLRLIK QLLPKIVISM 540 DQGCDRGDLV FSHYFLHALQ SCIVLLDSFD AAGTDQDVTN KIERFVLQPR IENCVLGRHC 600 TAEKTLPWRT LFASAGFVPF QFSNFTETQA ECLLKRVQVR GFYVEKRQAA LYLYWQRGEL 660 ASVSAWRC

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

VILEPKSVLD QRSPSPPTST STLSSSLGGG AVRFTDTAGV AAGAAVSDKP AIKWPNAAGE  60
EGGRKEEWAP ELHPVPASLE MDWDTMLTES AASPGQEQTF LRWIMGDPDD PAKQQHLMLS  120
SPTPMPEFDT GNHGLGFGLI DPGFGFEHNA SASSISSHPT PPQLDAAPGE KNHIFSTSLP  180
FSIPPAMFFQ EHTEEKPQFF GSNLLLNQFQ QNQVPANPAF FVPLPSFSSS TENLFPNSHP  240
GAGSELFVRP QPNQNLNIPQ LHPVPYHLQH RPLKPKSLSA GDEAMAIQQQ HQQALVDQLL  300
KAAEFVESGN LVGAHGILAR LNHQLPSAVG KPFLRSAFYF KEALQLLVNY VNPQAATSSP  360
HHRRTPFTSP LASPLDVVLK LSAYKAFSEV SPIMQFTNFT ATQTLLEELG TSDCIHIIDF  420
DIGVGGQWSS FMQELSQRRS SSSAISLLKI TAFVSPYAFH PLELHLTKEN LSHFASDLNI  480
PFEINIANIE SFDPAEILVL SAGSNEAIAV NLPVGAWQGH SFPTLLRLIK QLLPKIVISM  540
DQGCDRGDLV FSHYFLHALQ SCIVLLDSFD AAGTDQDVTN KIERFVLQPR IENCVLGRHC  600
TAEKTLPWRT LFASAGFVPF QFSNFTETQA ECLLKRVQVR GFYVEKRQAA LYLYWQRGEL  660
ASVSAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-24	330	667	37	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020592906.1	0.0	LOW QUALITY PROTEIN: scarecrow-like protein 6
TrEMBL	A0A2I0WER5	0.0	A0A2I0WER5_9ASPA; Scarecrow-like protein 6
STRING	GSMUA_Achr8P11160_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-95	GRAS family protein