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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_03146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27133.8 Da PI: 5.3084 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 53 | 101 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g PEQU_03146 53 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 101 56******.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.3E-33 | 52 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.521 | 52 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-27 | 52 | 108 | No hit | No description |
PRINTS | PR00367 | 1.4E-7 | 53 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-28 | 53 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 53 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-11 | 55 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-7 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSSQRNQAII PQEEQNPHMM NFSNSPPSQS STTTASSPTE KRGRRKPAEP GRFLGVRRRP 60 WGRYAAEIRD PTTKERHWLG TFDTAHEAAL AYDRAALSMK GTQAKTNFVY ADQNSSFHPF 120 LNPAFHSQTL TLAAAPPPTP FPQLEGQIND FTPFHPGELF GLSGDTRSGE LSSIIPESYW 180 NSSNNSAASR QVSDVSTVKG CTTNGEENVV DEMGSGVWMD EALWEFGACG APTCFDGGMG 240 DFSSSSWM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-20 | 43 | 108 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594928.1 | 0.0 | ethylene-responsive transcription factor 12-like | ||||
TrEMBL | A0A2I0VJW4 | 1e-118 | A0A2I0VJW4_9ASPA; Ethylene-responsive transcription factor ERF086 | ||||
STRING | GSMUA_Achr8P30180_001 | 8e-55 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10525 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 4e-43 | ERF family protein |