PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_02755

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 714aa MW: 77680.9 Da PI: 6.7725

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_02755	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	291.5	2.3e-89	341	713	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetsekn........sseelaalklfsevsP 89 l+++L+++Ae+v++g++ a+ +Larl+++ + p g+p+ R a+yf+eAL+ +a+ + l ++ p + ++ + ++ +l+a+k+fsevsP PEQU_02755 341 LIDQLFKAAEFVETGNFISAHGILARLNHQlSFPLGKPLLRSAFYFKEALHLLVANsYNPPLTASYPHPHRAPFTtslftpldVVLKLSAYKAFSEVSP 439 5789**********************997889*****************95556666665433333322367888889999******** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 il f+++t q +le++ + +++H+iDfdi+ G+QW +++++La+R+ +++p+l+iT+++s +++ el+ t e+L++fA+ ++pfe+n+ +++ PEQU_02755 440 ILHFTNFTVTQVLLEELGTTDCIHVIDFDIGIGGQWSSFIHELAQRRssSSTPRLKITAFVSFCAFHPLELHLTSENLSHFAADRNIPFEINISSIESF 538 ****************************************99977889******9999**********************9655666 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 + +e+ + + ++E++aVnl + + +++L+l+k+l Pk+vv v+q +d+++ +F ++fl++++ + l+ds++a +++ ++++k+ PEQU_02755 539 DPVEILAASAGRNETIAVNLPVGAGLNP--------SFTATLHLIKQLTPKIVVSVDQGSDRSDLPFSHHFLHSFQSSMILLDSIDAA-GSNLDAANKI 628 666665556666*****9554444........46679****************************************999.7888** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Er++l+++i+n+v+ + ++ + + Wr+ +++aGF pv++s++++ qa++ll++v+++g++ve++++sl+l+W++ +Lvs+SaWr PEQU_02755 629 ERFILQPKIENCVMGRYRA----TDKILPWRSLFTSAGFVPVQFSNFTEVQADCLLKRVQVRGFHVEKRQASLYLYWQRGELVSISAWR 713 ***********9999....89999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.198	315	693	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.9E-87	341	713	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MRGMPFSRSG KGALEAIAAQ ILGEEDKGGT FWSRSSHRKK KGEVLEPRSV LYHRRSPSPP 60 TSTSTLSSSL SGGVGGGGGS TDTGGVAAVS ENPSQRKEEW ATELQTIAGS PEMSGFIGSG 120 EKCGMEAEDW ETMLSAPTAS PNQEQTFLRW IMGDINDPSA VSKHHHYPQI STQASPVEFD 180 AGIAGSSFGL VDPLFGFEPI GGIAGVTSSS GGFYQSSRNS DGKNAVFMSP PPGMAFFQEP 240 IEEKPQIFGH NLVLQTNTPS NPDLFVPSAS FGAVTEQHLT SNLLPSHPKR HHSMPNDPAC 300 QIPAVCTGKL LQAPYQLQQR LMKPRTSLAG EDAAAAAAFG LIDQLFKAAE FVETGNFISA 360 HGILARLNHQ LSFPLGKPLL RSAFYFKEAL HLLVANSYNP PLTASYPHPH RAPFTTSLFT 420 PLDVVLKLSA YKAFSEVSPI LHFTNFTVTQ VLLEELGTTD CIHVIDFDIG IGGQWSSFIH 480 ELAQRRSSSS TPRLKITAFV SFCAFHPLEL HLTSENLSHF AADRNIPFEI NISSIESFDP 540 VEILAASAGR NETIAVNLPV GAGLNPSFTA TLHLIKQLTP KIVVSVDQGS DRSDLPFSHH 600 FLHSFQSSMI LLDSIDAAGS NLDAANKIER FILQPKIENC VMGRYRATDK ILPWRSLFTS 660 AGFVPVQFSN FTEVQADCLL KRVQVRGFHV EKRQASLYLY WQRGELVSIS AWRC

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MRGMPFSRSG KGALEAIAAQ ILGEEDKGGT FWSRSSHRKK KGEVLEPRSV LYHRRSPSPP  60
TSTSTLSSSL SGGVGGGGGS TDTGGVAAVS ENPSQRKEEW ATELQTIAGS PEMSGFIGSG  120
EKCGMEAEDW ETMLSAPTAS PNQEQTFLRW IMGDINDPSA VSKHHHYPQI STQASPVEFD  180
AGIAGSSFGL VDPLFGFEPI GGIAGVTSSS GGFYQSSRNS DGKNAVFMSP PPGMAFFQEP  240
IEEKPQIFGH NLVLQTNTPS NPDLFVPSAS FGAVTEQHLT SNLLPSHPKR HHSMPNDPAC  300
QIPAVCTGKL LQAPYQLQQR LMKPRTSLAG EDAAAAAAFG LIDQLFKAAE FVETGNFISA  360
HGILARLNHQ LSFPLGKPLL RSAFYFKEAL HLLVANSYNP PLTASYPHPH RAPFTTSLFT  420
PLDVVLKLSA YKAFSEVSPI LHFTNFTVTQ VLLEELGTTD CIHVIDFDIG IGGQWSSFIH  480
ELAQRRSSSS TPRLKITAFV SFCAFHPLEL HLTSENLSHF AADRNIPFEI NISSIESFDP  540
VEILAASAGR NETIAVNLPV GAGLNPSFTA TLHLIKQLTP KIVVSVDQGS DRSDLPFSHH  600
FLHSFQSSMI LLDSIDAAGS NLDAANKIER FILQPKIENC VMGRYRATDK ILPWRSLFTS  660
AGFVPVQFSN FTEVQADCLL KRVQVRGFHV EKRQASLYLY WQRGELVSIS AWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-25	347	712	25	378	Protein SCARECROW
5b3h_A	6e-25	347	712	24	377	Protein SCARECROW
5b3h_D	6e-25	347	712	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020590657.1	0.0	scarecrow-like protein 27
TrEMBL	A0A3G2CI32	0.0	A0A3G2CI32_CYMEN; Scarecrow-like protein 27-like
STRING	GSMUA_Achr8P11160_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	2e-95	GRAS family protein