PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01372
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 176aa    MW: 19850.3 Da    PI: 10.2133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01372genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183585155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a + ++g
  PEQU_01372 35 PKYRGVRMRN-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVASLTIKG 85
                79*****998.**********854...6*******************99887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.21E-323595No hitNo description
PfamPF008472.1E-123584IPR001471AP2/ERF domain
SMARTSM003801.4E-363699IPR001471AP2/ERF domain
PROSITE profilePS5103223.2483693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-323694IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-213694IPR016177DNA-binding domain
PRINTSPR003675.3E-113748IPR001471AP2/ERF domain
PRINTSPR003675.3E-115975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDQSLSHNSS STSSTPNPED SFPHTRKRNR DLKPPKYRGV RMRNWGKWVS EIREPKKKSR  60
IWLGTFPTAE MAARAHDVAS LTIKGQSAQL NFPHLAAEFP RPATTSPKDI QAAAAKAAAF  120
TYRQPPLPKQ STPPATPPSS SDEDAAFLDL PDIIDFRAGW VSLWTDELNF RFLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1936941473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599584.11e-126ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-44ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A455LAF38e-75A0A455LAF3_9ASPA; Ethylene-responsive transcription factor ERF-like protein (Fragment)
STRINGVIT_15s0021g02110.t011e-47(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]