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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_01372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19850.3 Da PI: 10.2133 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 35 | 85 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a + ++g PEQU_01372 35 PKYRGVRMRN-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVASLTIKG 85 79*****998.**********854...6*******************99887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.21E-32 | 35 | 95 | No hit | No description |
Pfam | PF00847 | 2.1E-12 | 35 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-36 | 36 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.248 | 36 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 36 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 36 | 94 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.3E-11 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDQSLSHNSS STSSTPNPED SFPHTRKRNR DLKPPKYRGV RMRNWGKWVS EIREPKKKSR 60 IWLGTFPTAE MAARAHDVAS LTIKGQSAQL NFPHLAAEFP RPATTSPKDI QAAAAKAAAF 120 TYRQPPLPKQ STPPATPPSS SDEDAAFLDL PDIIDFRAGW VSLWTDELNF RFLWEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-19 | 36 | 94 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020599584.1 | 1e-126 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 2e-44 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A455LAF3 | 8e-75 | A0A455LAF3_9ASPA; Ethylene-responsive transcription factor ERF-like protein (Fragment) | ||||
STRING | VIT_15s0021g02110.t01 | 1e-47 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 9e-44 | ERF family protein |
Publications ? help Back to Top | |||
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