PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01271
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 553aa    MW: 61798.7 Da    PI: 4.7165
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01271genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.91.2e-1391835532374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL+ecA ++s+g+ e aqa++++l+++++ +gdp qRlaay++e+Laar+a+s+++lykal+++e +   ++++l+a+++++e++P++kf++++aN 
  PEQU_01271 183 KQLLFECASVISDGNVEDAQAMITELRQMVAIQGDPPQRLAAYLVEGLAARIASSGHGLYKALKCKEPP---TTDRLSAMQILFEICPCFKFGFMAANG 278
                 589*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea++ eervHi+Dfdi+qG Q+++L+qaL++R+ +pp+lRiTgv++pe++      l+ +g+rL+k+Aee+gvpfef++ +a +++d+++++L+++
  PEQU_01271 279 AIAEAFKDEERVHILDFDINQGSQYITLIQALSARQTKPPRLRITGVDDPETVqrAIGGLKVIGQRLEKLAEEVGVPFEFKA-IAAKTADVTPSMLDCR 376
                 ***************************************************99777789***********************.6999************ PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+Eal+Vn+++qlh+++desvs+ ++rd++L++vksl Pk+v+vveq++++n+++F++rf+e  +yysa+f+sl+a+lpres +r++vEr++l+r+ivn
  PEQU_01271 377 PDEALVVNFAFQLHHMPDESVSTVNQRDRLLRMVKSLDPKLVTVVEQDVNTNTTPFFQRFVEVYKYYSAVFESLDATLPRESPDRMNVERQCLARDIVN 475
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vacega+r+er e ++kWr+r+++aGF + pls++++  +++ll+ ++ d y+++ee+g+l++gW+d+ Lv++SaW+
  PEQU_01271 476 IVACEGADRIERYEAAGKWRARMTMAGFVSCPLSSYVNGAIRSLLKSTYCDRYKIKEENGALYFGWEDKILVVASAWK 553
                 *************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.959156533IPR005202Transcription factor GRAS
PfamPF035144.2E-137183553IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MSLMRSADSS TSCREPGCYG RKCCDSSALS SQIYASDKQM LHYGLNSYQS DIYGQQYFTN  60
SSSGNACPSM TQENSYGACF SAVHHQVSSL SNNQQETHSL SESHSLDPEM DYDEIDIRLK  120
LQELERALLD ETDDFVDLGE EMFIDEDWTE SIKSLMSPNS PKESSSDSNV STISSNRETK  180
TPKQLLFECA SVISDGNVED AQAMITELRQ MVAIQGDPPQ RLAAYLVEGL AARIASSGHG  240
LYKALKCKEP PTTDRLSAMQ ILFEICPCFK FGFMAANGAI AEAFKDEERV HILDFDINQG  300
SQYITLIQAL SARQTKPPRL RITGVDDPET VQRAIGGLKV IGQRLEKLAE EVGVPFEFKA  360
IAAKTADVTP SMLDCRPDEA LVVNFAFQLH HMPDESVSTV NQRDRLLRMV KSLDPKLVTV  420
VEQDVNTNTT PFFQRFVEVY KYYSAVFESL DATLPRESPD RMNVERQCLA RDIVNIVACE  480
GADRIERYEA AGKWRARMTM AGFVSCPLSS YVNGAIRSLL KSTYCDRYKI KEENGALYFG  540
WEDKILVVAS AWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6818855224377Protein SCARECROW
5b3h_D3e-6818855224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020581956.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A3G2CI510.0A0A3G2CI51_CYMEN; Scarecrow-like protein 1-like transcript variant X2
STRINGXP_008806489.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]