PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_01196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 500aa MW: 53235.3 Da PI: 8.9211 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PEQU_01196 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 55 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.22E-6 | 55 | 78 | No hit | No description |
Pfam | PF12171 | 8.0E-5 | 56 | 78 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 56 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 81 | 97 | 127 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.22E-6 | 127 | 152 | No hit | No description |
SMART | SM00355 | 290 | 132 | 152 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MSNSASGETS VSSGHLTAPP SLPPPAKKKR NLPGMPDPNA EVIALSPKTL MATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTGK EARKRVYVCP EPGCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCLKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC 180 DALAEESART QTNATAAEKE PKLTITEAAS LQENQMAPPP PDQKGLLFFF FGLHFYYKKL 240 LVGCYFSLTS LPCYYSEPEN TPGILQYLHQ PPLAPVSISM NCSNSSCTTT SGGSNSLFAS 300 TAATQRTSFS DLISSMSRSE VEPPSLCLSS NGPSSLFPPA ADRRQFSGMA SSAHMSATAL 360 LQKAAQMGAA ASGSSFLRGF GLAESSSPLA IGGGGDSQWN EPASISAGLG LGLPYDNGCT 420 VLPDMMMGSA VILGSKPAAT LDFLGVGPAG SANAGGLSAF INSISGGGLE AYGRGRSTSP 480 ANAWDSRGDG DLKTSGRAIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 128 | 189 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 128 | 189 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581568.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-139 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A2I0WLT8 | 0.0 | A0A2I0WLT8_9ASPA; Zinc finger protein MAGPIE | ||||
STRING | XP_008776861.1 | 1e-168 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-112 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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