PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 500aa MW: 53235.3 Da PI: 8.9211

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_01196	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PEQU_01196 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	55	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.22E-6	55	78	No hit	No description
Pfam	PF12171	8.0E-5	56	78	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	56	78	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	81	97	127	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.22E-6	127	152	No hit	No description
SMART	SM00355	290	132	152	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MSNSASGETS VSSGHLTAPP SLPPPAKKKR NLPGMPDPNA EVIALSPKTL MATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTGK EARKRVYVCP EPGCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCLKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC 180 DALAEESART QTNATAAEKE PKLTITEAAS LQENQMAPPP PDQKGLLFFF FGLHFYYKKL 240 LVGCYFSLTS LPCYYSEPEN TPGILQYLHQ PPLAPVSISM NCSNSSCTTT SGGSNSLFAS 300 TAATQRTSFS DLISSMSRSE VEPPSLCLSS NGPSSLFPPA ADRRQFSGMA SSAHMSATAL 360 LQKAAQMGAA ASGSSFLRGF GLAESSSPLA IGGGGDSQWN EPASISAGLG LGLPYDNGCT 420 VLPDMMMGSA VILGSKPAAT LDFLGVGPAG SANAGGLSAF INSISGGGLE AYGRGRSTSP 480 ANAWDSRGDG DLKTSGRAIL

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MSNSASGETS VSSGHLTAPP SLPPPAKKKR NLPGMPDPNA EVIALSPKTL MATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRTGK EARKRVYVCP EPGCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCLKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC  180
DALAEESART QTNATAAEKE PKLTITEAAS LQENQMAPPP PDQKGLLFFF FGLHFYYKKL  240
LVGCYFSLTS LPCYYSEPEN TPGILQYLHQ PPLAPVSISM NCSNSSCTTT SGGSNSLFAS  300
TAATQRTSFS DLISSMSRSE VEPPSLCLSS NGPSSLFPPA ADRRQFSGMA SSAHMSATAL  360
LQKAAQMGAA ASGSSFLRGF GLAESSSPLA IGGGGDSQWN EPASISAGLG LGLPYDNGCT  420
VLPDMMMGSA VILGSKPAAT LDFLGVGPAG SANAGGLSAF INSISGGGLE AYGRGRSTSP  480
ANAWDSRGDG DLKTSGRAIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	128	189	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-34	128	189	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020581568.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-139	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2I0WLT8	0.0	A0A2I0WLT8_9ASPA; Zinc finger protein MAGPIE
STRING	XP_008776861.1	1e-168	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-112	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]