PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_00782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 87aa MW: 9853.22 Da PI: 9.4431 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 18 | 40 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k++s+ L H+ H PEQU_00782 18 HACSYCSKVYSTLQALGGHQTAH 40 67**************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.69E-6 | 15 | 43 | No hit | No description |
Pfam | PF13912 | 1.1E-9 | 18 | 43 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.162 | 18 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 20 | 40 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MRRTSDRCSS RLISNDWHAC SYCSKVYSTL QALGGHQTAH RKEIEKMRRQ NLLRGREKAA 60 MNVQESSVNL ELTLGTGDCG LDLSLRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2I0VSR6 | 1e-31 | A0A2I0VSR6_9ASPA; Transcriptional regulator TAC1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20809 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 2e-08 | C2H2 family protein |