PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00208
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 142aa    MW: 16177.7 Da    PI: 8.87
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00208genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.42.5e-551141234373
        GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                 ++P vv+v+e+ea+h+s+ Fl+rf+eal yysa+f+slea+lp+ s+er++vEr+++grei+++va eg+ rrerhe++e+W+  +++aGF   pls +
  PEQU_00208   1 MNPAVVTVAEKEAKHSSPLFLQRFAEALGYYSAVFESLEATLPPSSRERMVVERMWIGREIEDIVAGEGEGRRERHERFERWEGLMKDAGFVVKPLSGF 99 
                 69************************************************************************************************* PP

        GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 a +qa+lllr ++ s+gyrve  +gsl+lgWk++pL++vSaW
  PEQU_00208 100 ALAQARLLLRLHYpSEGYRVEMMKGSLFLGWKGKPLYAVSAW 141
                 ****************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.8E-531141IPR005202Transcription factor GRAS
PROSITE profilePS5098525.4281121IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MNPAVVTVAE KEAKHSSPLF LQRFAEALGY YSAVFESLEA TLPPSSRERM VVERMWIGRE  60
IEDIVAGEGE GRRERHERFE RWEGLMKDAG FVVKPLSGFA LAQARLLLRL HYPSEGYRVE  120
MMKGSLFLGW KGKPLYAVSA WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-251142241379Protein SCARECROW
5b3h_A7e-251142240378Protein SCARECROW
5b3h_D7e-251142240378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020600095.18e-99LOW QUALITY PROTEIN: scarecrow-like protein 18
SwissprotQ9ZWC57e-57SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A2I0VKR72e-78A0A2I0VKR7_9ASPA; Scarecrow-like protein 18
TrEMBLA0A3G2CI509e-80A0A3G2CI50_CYMEN; Scarecrow-like protein 18-like transcript variant X2 (Fragment)
STRINGXP_008798776.12e-71(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-41GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]