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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PDK_30s999931g002 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family |
Trihelix |
Protein Properties |
Length: 263aa MW: 31494.4 Da PI: 8.2201 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PDK_30s999931g002 | genome | PDK | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 80.4 | 2.5e-25 | 35 | 116 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt+ e+++ +++r e ++++ ++k++kplWe++s+++r++gf+r+p+qCk+kw+nl r+k i+++++++ s+++p++++l+
PDK_30s999931g002 35 QWTHAETKEFLAVRAEFDRSFMETKRNKPLWEAISARLRQKGFNRTPEQCKSKWKNLVSRFKGIEAMDGEG----SRQFPFLEELR 116
7********************************************************************97....78899999986 PP
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2 | Myb_DNA-binding | 22.4 | 2.9e-07 | 35 | 91 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47
WT E + ++ + +++ W++I++++ +Rt++qcks+w ++
PDK_30s999931g002 35 QWTHAETKEFLAVRAEFDRSfmetkrnkpLWEAISARLRqkgFNRTPEQCKSKWKNL 91
59999999999999999966999999999***********9989***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 263 aa
Download sequence Send
to blast |
MELHHHYNPY YINVNPVPEG GGGGERDRER DRFPQWTHAE TKEFLAVRAE FDRSFMETKR 60 NKPLWEAISA RLRQKGFNRT PEQCKSKWKN LVSRFKGIEA MDGEGSRQFP FLEELRTIFS 120 ARMERLQVSK KDKGKGVQVQ GEEWGEEEEE EEEEEEEAPV RRCTSDMKLL GVVWMRSKKK 180 KRVERTRRFE EEVENALKEF ARRQLEMQAR WIAAAEAREA ERKAKEEEWR RAMDALEEER 240 KTMERTWRER EEERRARGGG RGL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ebi_A | 2e-14 | 36 | 114 | 7 | 86 | DNA binding protein GT-1 |