PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s996831g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 25356.4 Da PI: 10.8127 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.5e-09 | 59 | 104 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h++rEr+RR+++ ++++ L +ll ++ K +K +i++ A Y+++L PDK_30s996831g001 59 KHKMRERQRREKLSQSYADLYSLLSSR-----SKGDKNSIVQSAAAYVREL 104 59************************8.....6999999*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.532 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-12 | 58 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-6 | 59 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-6 | 59 | 109 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-10 | 59 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-7 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAVLRSAFTP YTGRRIIEAA SFGNGGRRKS IHRRMIEMLR RIPKAKEECK GVEMSRGFKH 60 KMRERQRREK LSQSYADLYS LLSSRSKGDK NSIVQSAAAY VRELKEVKEQ KQRRNEELKA 120 MISGSNGTKE EAKIKFRVVN PSSAIDSMIE VLRCLKTMDV KARAIRSDLS AHDLSAIISI 180 ETKVAAREVE GAVEGALMDA EAKLPRPFPR TPAWSQLCRV ENMT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017700550.1 | 1e-128 | transcription factor BHLH148-like | ||||
Swissprot | Q75KV9 | 3e-60 | BH148_ORYSJ; Transcription factor BHLH148 | ||||
TrEMBL | A0A2H3ZVW0 | 1e-127 | A0A2H3ZVW0_PHODC; transcription factor BHLH148-like | ||||
STRING | XP_008802847.1 | 1e-127 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5940 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 2e-25 | bHLH family protein |
Publications ? help Back to Top | |||
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