PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s993331g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 557aa MW: 63176.2 Da PI: 9.7993 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.8e-16 | 129 | 180 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PDK_30s993331g001 129 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 180 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-17 | 129 | 190 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.5E-12 | 129 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.85E-22 | 129 | 190 | No hit | No description |
SMART | SM00380 | 4.6E-25 | 130 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.189 | 130 | 188 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-17 | 130 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MKRTRRSVPR DSPLQRSSIY RGVTSKRRKP PHISLTNEMR TKKRKEMTLK RLIPKTNHNP 60 VSHGRTGTGG RADTRPIYGT RPAGMNPKTK KESKLSTYEE ELKEMEGQSK EEYIGSLRRK 120 SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDMAAIEYRG 180 LNAVTNFDLS RYIKWLRPNH DGSNASPSID PLPNPALADH TCDVQQSFHQ HQQSVGEISQ 240 FPEQRASGVA ASSALGLLLQ SPKFKEMLER TSAASGSSSS PKFDSKPSRC SFPDDIQTYF 300 ESPDSGSYTE GDDAIFGELH AFTSSMLEFE LDAYLVSMAY LNLMRGEGLV ENYDHALFCY 360 VGIHAKIGWF EAFDELVRFH REVRDGQRRR ERGSRVEEKE TRRKKHAGSD GDPNPREVEG 420 NPRGRPEKEI RGIREVEEEK EVLEGGDDGN LTEVEGNYGG GVAREEDGKR NSKKKGVNDA 480 RESSELGGRN EKKMEVEGER RKEEKKRRRE MGEERRDGGG KKRRNSDDGE ENEGGGLDDQ 540 SERHKKKKKR RKIGTEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 506 | 523 | RRREMGEERRDGGGKKRR |
2 | 541 | 547 | ERHKKKK |
3 | 545 | 550 | KKKKRR |
4 | 545 | 551 | KKKKRRK |
5 | 546 | 550 | KKKRR |
6 | 546 | 551 | KKKRRK |
7 | 547 | 551 | KKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790117.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2H3XX86 | 0.0 | A0A2H3XX86_PHODC; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
STRING | XP_008790117.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 2e-63 | AP2 family protein |