PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s989601g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19875.6 Da PI: 9.5158 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.1 | 1.4e-19 | 14 | 114 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+C++lr++C +dC++a +fp ++p + ++ +Ga++ ++l l++ + + a++slvy A r+r+ + a+ + +lq+++ l++ PDK_30s989601g001 14 PCAVCAHLRQRCRRDCPFALHFPGDRPTCLDFLCLAYGAQHAARMLGLLDRGQWTSAAHSLVYAAILRLRNREREALDAMVRLQNEVVDLQV 105 7******************************************************************************************9 PP DUF260 93 elallkeel 101 + l++++ PDK_30s989601g001 106 SNSILRNQI 114 999998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.377 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-18 | 14 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MDSSSPPPPV RHAPCAVCAH LRQRCRRDCP FALHFPGDRP TCLDFLCLAY GAQHAARMLG 60 LLDRGQWTSA AHSLVYAAIL RLRNREREAL DAMVRLQNEV VDLQVSNSIL RNQIAARQRP 120 RQRPLSIYDL IQWPTNGGLA GVNEPPGGQT GRRPPASGPG EGIVPPGGQH GAPSSSGDNN 180 RVI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930309.1 | 7e-78 | LOB domain-containing protein 11 | ||||
STRING | XP_008801115.1 | 2e-82 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50843 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-15 | LBD family protein |