PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s989601g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 183aa MW: 19875.6 Da PI: 9.5158

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s989601g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.1	1.4e-19	14	114	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+C++lr++C +dC++a +fp ++p + ++ +Ga++ ++l l++ + + a++slvy A r+r+ + a+ + +lq+++ l++ PDK_30s989601g001 14 PCAVCAHLRQRCRRDCPFALHFPGDRPTCLDFLCLAYGAQHAARMLGLLDRGQWTSAAHSLVYAAILRLRNREREALDAMVRLQNEVVDLQV 105 7******************************************************************************************9 PP DUF260 93 elallkeel 101 + l++++ PDK_30s989601g001 106 SNSILRNQI 114 999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.377	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-18	14	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MDSSSPPPPV RHAPCAVCAH LRQRCRRDCP FALHFPGDRP TCLDFLCLAY GAQHAARMLG 60 LLDRGQWTSA AHSLVYAAIL RLRNREREAL DAMVRLQNEV VDLQVSNSIL RNQIAARQRP 120 RQRPLSIYDL IQWPTNGGLA GVNEPPGGQT GRRPPASGPG EGIVPPGGQH GAPSSSGDNN 180 RVI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930309.1	7e-78	LOB domain-containing protein 11
STRING	XP_008801115.1	2e-82	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50843	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-15	LBD family protein