PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s987991g011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 185aa MW: 20743.4 Da PI: 8.8298 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.2 | 1.1e-06 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L++l+P++ K +Ka++L +++eY+k+Lq PDK_30s987991g011 3 ILQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 31 588889887.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.693 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.20E-7 | 1 | 34 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-9 | 2 | 39 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-10 | 2 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MKILQKLVPN SSKTDKASML DEVIEYLKQL QAQVDMMNRM STMMMPMTMP QLQISMMAQL 60 AQMGMGMGMG MMDLNSLNRP SYAGLPPVLH PSAFLPPPSA SWDASGDRMQ QPGGTVVPDP 120 FSAFLAYQTT QCGNPFKWIP VFSRFSDMER CSVFNKSLIH SRLDFNISSK LMVSLVYRCL 180 HAPTY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026662228.1 | 2e-86 | transcription factor UNE10-like isoform X3 | ||||
Swissprot | Q8GZ38 | 4e-23 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | A0A3Q0I5K6 | 5e-85 | A0A3Q0I5K6_PHODC; transcription factor UNE10-like isoform X3 | ||||
STRING | XP_008796095.1 | 2e-88 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7474 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-21 | bHLH family protein |
Publications ? help Back to Top | |||
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