PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s987941g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 370aa    MW: 40417 Da    PI: 5.2851
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s987941g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.3e-09202273155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpse....ng..............krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +       +               +++++lg f+++ eAa+a+++a+ k +g
  PDK_30s987941g001 202 SKYRGVTLHK-CGRWEARMGQFLGkkqmKKnvetqsspienailGCRYIYLGLFDSEIEAARAYDKAAIKCNG 273
                        89********.7******9985443555116899899988877666**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-9202276IPR016177DNA-binding domain
PfamPF008471.9E-6202273IPR001471AP2/ERF domain
CDDcd000181.37E-16202276No hitNo description
Gene3DG3DSA:3.30.730.102.7E-9203276IPR001471AP2/ERF domain
SMARTSM003802.1E-16203282IPR001471AP2/ERF domain
PROSITE profilePS5103212.774203281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMMLDLNLAS SGELSAFKEK PLPDEDSGTS NSSVLNAEAS SNARNDDSCS ARPAAGFQFG  60
ILKRSASAVR GNEVEEEIEG SGNDVSLESS FLTRQLFPPA SPADPEWPQL PAVAASSSAS  120
SRQHWLDLRF SQSDVPADGL WETGLFGAYD RAAIKFRGVD ADINFNLSDY EEDLKQQMRN  180
LTKEEFVHIL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKQMKK NVETQSSPIE  240
NAILGCRYIY LGLFDSEIEA ARAYDKAAIK CNGRDAIDSP SSLLAGQPHH VWTAQYPAPI  300
EERAREKRPE VGSPALPTWA WQMHGPAPFS LLSSAASSGF SITAVTSAHP SASLQSQFDP  360
LAPSNFLFES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789029.11e-180AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_008789030.11e-180AP2-like ethylene-responsive transcription factor TOE3 isoform X1
TrEMBLA0A2H3ZP211e-179A0A2H3ZP21_PHODC; AP2-like ethylene-responsive transcription factor TOE3 isoform X1
STRINGXP_008789029.11e-180(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-58related to AP2.7