PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s986411g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 205aa MW: 22255.6 Da PI: 9.4298

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s986411g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.4	5.8e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh++FGasnv kll++lp+ +reda++sl+yeAear+rdPvyG+vg i+ lq++l+q+++ PDK_30s986411g001 7 PCAACKFLRRKCTPGCVFAPYFPPDQPQKFANVHRVFGASNVAKLLNELPPVQREDAVNSLAYEAEARLRDPVYGCVGYISILQHKLRQVQN 98 7******************************************************************************************* PP DUF260 93 elallkee 100 +l +k+e PDK_30s986411g001 99 DLFNAKKE 106 *9888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.286	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-44	7	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTP GCVFAPYFPP DQPQKFANVH RVFGASNVAK LLNELPPVQR 60 EDAVNSLAYE AEARLRDPVY GCVGYISILQ HKLRQVQNDL FNAKKELSAY IGPAALGPFL 120 PYAGPDHHHQ AAPVGGIHHH PQYHHFQGAS SSSAPPFGVP GMGMGMGMGL ALAAGEGPFC 180 KQREIHLAGK VDKQRDRGKK EKMTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-53	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-53	4	110	8	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ951644	4e-38	JQ951644.1 Andropogon hallii Ramosa2 (ra2) gene, partial cds.
GenBank	KR494090	4e-38	KR494090.1 Sorghum leiocladum isolate ausTRC 300170 clone 1 ramosa 2 protein (ra2) gene, partial cds.
GenBank	KR494092	4e-38	KR494092.1 Sorghum macrospermum isolate ausTRC 302367 clone 1 ramosa 2 protein (ra2) gene, partial cds.
GenBank	KR494093	4e-38	KR494093.1 Sorghum macrospermum isolate ausTRC 302367 clone 2 ramosa 2 protein (ra2) gene, partial cds.
GenBank	KR494096	4e-38	KR494096.1 Sorghum laxiflorum isolate ausTRC 302510 clone 1 ramosa 2 protein (ra2) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026661227.1	1e-114	LOB domain-containing protein 6-like
Swissprot	Q9FKZ3	7e-64	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A3Q0I737	1e-112	A0A3Q0I737_PHODC; LOB domain-containing protein 6-like
STRING	XP_008792635.1	1e-113	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-66	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]