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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s983931g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22580.5 Da PI: 6.4937 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.2 | 5.8e-43 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C+++Cvlapyfp ++p kfa +h++FGasn++k+l++lpe++r+da+ss++yeA+ar+rdPvyG++g+i +lq+q+++l++ PDK_30s983931g003 41 PCAACKILRRRCTEKCVLAPYFPPNEPLKFATAHRVFGASNIIKFLQELPESQRSDAVSSMAYEANARIRDPVYGCAGIICQLQKQVSELQT 132 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e PDK_30s983931g003 133 QLARTQAE 140 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.511 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-43 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEAGDAATTT TFRHPLSSSP SSSPASSPHL PPASPPVVLS PCAACKILRR RCTEKCVLAP 60 YFPPNEPLKF ATAHRVFGAS NIIKFLQELP ESQRSDAVSS MAYEANARIR DPVYGCAGII 120 CQLQKQVSEL QTQLARTQAE LDTTKTQYAN LVAIICMEMT QSQQQFVRQP PHSFNTNNPN 180 LFQSDASMQD DYFQGSIWEE PLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-43 | 36 | 141 | 6 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-43 | 36 | 141 | 6 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783779.1 | 1e-151 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-66 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2H3XHB0 | 1e-150 | A0A2H3XHB0_PHODC; LOB domain-containing protein 1-like | ||||
STRING | XP_008783779.1 | 1e-151 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-64 | LOB domain-containing protein 1 |