PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s975801g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 198aa MW: 21847.6 Da PI: 7.3572 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 2e-12 | 22 | 68 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+ri+s +++Lr++l + +K +Ka+ L kAve +++L PDK_30s975801g005 22 RNHREAEKRRRERIKSHLDRLRTILACD-----PKTDKASLLAKAVERVRDL 68 78************************98.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.5E-12 | 15 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.91 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-10 | 22 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 23 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-9 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGGGGGGGGG DAPTDRALIA SRNHREAEKR RRERIKSHLD RLRTILACDP KTDKASLLAK 60 AVERVRDLKQ RTADITETQL FPTENDEIVV LPSSSSNGER SVFEASLCCE DRSDLLPELI 120 ETLRSLRLKT LRAEIATLGG RVRNVLVLAK EKEEYEEEAE EGEGSGGAFL RDALKALVDR 180 PVSDDRSKRR RVVDRGLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 191 | KRRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008788501.1 | 1e-137 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 4e-52 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A2H3XTE6 | 1e-135 | A0A2H3XTE6_PHODC; transcription factor bHLH106-like | ||||
STRING | XP_008788501.1 | 1e-136 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-42 | bHLH family protein |
Publications ? help Back to Top | |||
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