PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s973861g013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 96aa MW: 10852.7 Da PI: 9.5778 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.6 | 1.4e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ PDK_30s973861g013 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58 79**********************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.6E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.403 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.00E-41 | 2 | 63 | No hit | No description |
SuperFamily | SSF55455 | 1.12E-30 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 96 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSV 60 GLQTSDLILC HFYAKMDGYP AVTFALCSLL PVHEQL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-21 | 1 | 62 | 1 | 62 | MEF2C |
5f28_B | 8e-21 | 1 | 62 | 1 | 62 | MEF2C |
5f28_C | 8e-21 | 1 | 62 | 1 | 62 | MEF2C |
5f28_D | 8e-21 | 1 | 62 | 1 | 62 | MEF2C |
6byy_A | 8e-21 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_B | 8e-21 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_C | 8e-21 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_D | 8e-21 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_A | 8e-21 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_B | 8e-21 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_C | 8e-21 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_D | 8e-21 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389276.1 | 8e-36 | PREDICTED: MADS-box transcription factor 6 | ||||
Swissprot | P29386 | 2e-36 | AGL6_ARATH; Agamous-like MADS-box protein AGL6 | ||||
TrEMBL | A0A199UL70 | 1e-36 | A0A199UL70_ANACO; MADS-box transcription factor 17 | ||||
STRING | Bra004927.1-P | 3e-35 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45650.1 | 9e-39 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|