|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PDK_30s972061g001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
Family |
Trihelix |
Protein Properties |
Length: 273aa MW: 30806.7 Da PI: 8.7552 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PDK_30s972061g001 | genome | PDK | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 47.9 | 3.5e-15 | 46 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ v L+++++ ++ +r+klk+++We+v++++ + ++p+qCk+k e+++kry+ + + ++ s++p+f +l+
PDK_30s972061g001 46 EWSEGAVASLLDVYEAKWVLRNRAKLKGHDWEDVARVVaaqsGSARPAKTPTQCKNKVESMKKRYRSESAAGGR------SRWPLFARLD 129
5*************************************84433333356******************9998887......5799999986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MEGNLQQVDN NANNPSLAAV GVDDSKEEEE HARVVGPGSD RSKRDEWSEG AVASLLDVYE 60 AKWVLRNRAK LKGHDWEDVA RVVAAQSGSA RPAKTPTQCK NKVESMKKRY RSESAAGGRS 120 RWPLFARLDG LVRCRSPTTA LVSVDRPPGR PAPSSHSPEP NVAAVAKQAE CEETKGKEHV 180 NEIHKEHCNM QPYDPCDGKQ KINDRKKRRM REREEKESWK VMESIQWLAE VALRVEQGRM 240 EAMREVERMR ALIVPRQNIN FSCHSACSCF HAQ
|
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G54390.1 | 3e-41 | sequence-specific DNA binding transcription factors |