PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s970051g010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 204aa MW: 23260.2 Da PI: 6.3004 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.6 | 2.8e-37 | 8 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf+F P+d+elvv++L++k+++ +++ ++++++d+++++PwdL+ k+ ++ + wyfF++r+++ t++gyWk g ++++ PDK_30s970051g010 8 LPPGFHFFPSDQELVVHFLQRKAARLPCRP-DIVPTIDLHYCDPWDLNGKALQGGRYWYFFTHRAQN--------TETANGYWKPIGIEESI 90 79*************************999.89**************977778899*******9774........45789************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s ++ vglk+tL+fy g+ p+g kt+Wvmhey+l PDK_30s970051g010 91 TS-GDISVGLKRTLIFYVGEPPEGMKTNWVMHEYHL 125 **.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-47 | 5 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.768 | 8 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-23 | 9 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGEGTTSLPP GFHFFPSDQE LVVHFLQRKA ARLPCRPDIV PTIDLHYCDP WDLNGKALQG 60 GRYWYFFTHR AQNTETANGY WKPIGIEESI TSGDISVGLK RTLIFYVGEP PEGMKTNWVM 120 HEYHLLDGVL GSSSSRGSSR RSLKKRSNTR IEPNKWVICR VYESSCASQN FHDDGMELSC 180 LDEVFLSLDD LDEHFLLNGK PYNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-38 | 7 | 170 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-38 | 7 | 170 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-38 | 7 | 170 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-38 | 7 | 170 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-38 | 7 | 170 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-38 | 7 | 170 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-38 | 7 | 170 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-38 | 7 | 170 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-38 | 7 | 170 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-38 | 7 | 170 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-38 | 7 | 170 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-38 | 7 | 170 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-38 | 7 | 170 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-38 | 7 | 170 | 16 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008799070.1 | 1e-144 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 2e-60 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2H3YIL9 | 1e-143 | A0A2H3YIL9_PHODC; NAC domain-containing protein 104-like | ||||
STRING | XP_008799070.1 | 1e-144 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-61 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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