PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s966651g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19713.4 Da PI: 6.9397 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.5 | 2.5e-39 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaC++l rkC++dC+l+pyfpa++p+kf +vhk+FGasnv+k+l+ l+e++reda++s+vyeA+ar++ PvyG++g i+ lq+ +e l+ PDK_30s966651g001 14 PCAACRILHRKCSRDCMLSPYFPADEPEKFGVVHKVFGASNVSKMLQMLEESRREDAVKSMVYEAQARLKHPVYGCTGAIFYLQKSVEDLEG 105 7******************************************************************************************9 PP DUF260 93 elallkee 100 l +++e+ PDK_30s966651g001 106 RLRATREQ 113 99999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.312 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-39 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDPHLRAIAK TDIPCAACRI LHRKCSRDCM LSPYFPADEP EKFGVVHKVF GASNVSKMLQ 60 MLEESRREDA VKSMVYEAQA RLKHPVYGCT GAIFYLQKSV EDLEGRLRAT REQLLDERER 120 RDQLLRVLTD TSHGSQFYHA NDLVVDASAM SSDANIIHGH SVRENPGDYY QMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-37 | 14 | 115 | 11 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-37 | 14 | 115 | 11 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008777046.1 | 1e-128 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-41 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 4e-41 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2H3X1V2 | 1e-126 | A0A2H3X1V2_PHODC; LOB domain-containing protein 1-like | ||||
STRING | XP_008777046.1 | 1e-127 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17783 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-41 | LOB domain-containing protein 1 |