PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s966621g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 255aa MW: 28889.6 Da PI: 5.1077

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s966621g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	111.7	4.3e-35	52	137	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+ +++r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a PDK_30s966621g001 52 RWPKAEVHALIKLRSGLDSRYQEAGPKGPLWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNRKR-PEDSKTCPYFHQLDA 137 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.178	45	109	IPR017877	Myb-like domain
SMART	SM00717	0.0081	49	111	IPR001005	SANT/Myb domain
CDD	cd12203	4.26E-31	51	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-4	51	108	IPR009057	Homeodomain-like
Pfam	PF13837	2.4E-24	52	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MQPSQQQQEL HQHHQSTEIG RHQVSSSSEL VPVPEQPEPV GTVNFEPVSP SRWPKAEVHA 60 LIKLRSGLDS RYQEAGPKGP LWEEISAGMQ RLGYNRSAKR CKEKWENINK YFKKVKESNR 120 KRPEDSKTCP YFHQLDALYR KKHLGSGGSG SNSGGGIQRH QEQQTDPDPN PQERKDIVKE 180 LMDQRQQQPT MEDYDKMEEP DSDNIDQDDD EDDDEDDEDG KMQYKIQFQR PNVGGGGGTT 240 STAAPTAGSF LAMVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791630.1	2e-98	trihelix transcription factor GTL1 isoform X1
Refseq	XP_008791631.1	4e-99	trihelix transcription factor GTL1 isoform X2
TrEMBL	A0A2H3Y0K6	4e-97	A0A2H3Y0K6_PHODC; trihelix transcription factor GTL1 isoform X1
TrEMBL	A0A2H3Y0M4	9e-98	A0A2H3Y0M4_PHODC; trihelix transcription factor GTL1 isoform X2
STRING	XP_008791630.1	6e-98	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-53	Trihelix family protein