PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s962821g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 562aa    MW: 62024.8 Da    PI: 7.0757
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s962821g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.82.4e-28208261155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  PDK_30s962821g001 208 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVEKLTRENVASHLQKYRL 261
                        79*******************.********************************8 PP
2Response_reg75.32.3e-25261341109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ ++ll+ +l + +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge + + + +
  PDK_30s962821g001  26 VLAVDDDPICLRLLEALLLQCQY-QVTTTNQAIMALKMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETKAVMKGI 115
                        799********************.***************888888*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +eel++
  PDK_30s962821g001 116 AHGACDYLLKPVRIEELRN 134
                        *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.4E-1751560IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.1E-4123147No hitNo description
SuperFamilySSF521727.54E-3523146IPR011006CheY-like superfamily
SMARTSM004482.9E-3124136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.31225140IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.1E-2326135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.14E-2227139No hitNo description
PROSITE profilePS5129411.963205264IPR017930Myb domain
SuperFamilySSF466891.09E-19205265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-30206266IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-25208261IPR006447Myb domain, plants
PfamPF002491.8E-6210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MTVEERKWSM GREGGPKDQF PVGLRVLAVD DDPICLRLLE ALLLQCQYQV TTTNQAIMAL  60
KMLRENKDKF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANGETKA VMKGIAHGAC  120
DYLLKPVRIE ELRNIWQHVV RRRKFDSKDH NNYDNGDDSD KAQQGQTTGG SSDHGGKLNR  180
KRKDQNEDDE DDGQENMHEN EELSTQKKPR VVWSVELHRK FVAAVNQLGI DKAVPKRILD  240
LMNVEKLTRE NVASHLQKYR LYLKRLSAVA SQQANMVAAF GGRDPSSLHI GSLDGYGNFH  300
ALAASGQLPA LSSFQTNGVL SRTNPAGYGL RGFATSGIVQ PEHTHCNTNN PINDLSKLQH  360
ISLPGSQHGK LLQGMPTTLE LDQLQQHKRM QEASIHLPGG FSGARLATGS SSNSFVNVTN  420
SPLLSQAYRQ HTQSKGLGNH SSVGIPSMSS DPFHMSVGGS SHLPDLGRCN DTWQDAVPLT  480
SYTSNTLSMN APFHHNDLAN MGASVPVVSH IDRNRLNISS SSCNSSKQLF EQQVPAWSSD  540
FVEALLVIIY ECKTSLHHSD SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25204267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942128.10.0two-component response regulator ORR22 isoform X2
SwissprotQ6K8X61e-171ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2H4A1730.0A0A2H4A173_PHODC; Two-component response regulator
STRINGXP_008813668.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-124response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]