PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s962821g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ARR-B | ||||||||
Protein Properties | Length: 562aa MW: 62024.8 Da PI: 7.0757 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.8 | 2.4e-28 | 208 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl PDK_30s962821g001 208 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVEKLTRENVASHLQKYRL 261 79*******************.********************************8 PP | |||||||
2 | Response_reg | 75.3 | 2.3e-25 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl vdD+p+ ++ll+ +l + +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge + + + + PDK_30s962821g001 26 VLAVDDDPICLRLLEALLLQCQY-QVTTTNQAIMALKMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETKAVMKGI 115 799********************.***************888888*******************87754.558******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel++ PDK_30s962821g001 116 AHGACDYLLKPVRIEELRN 134 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.4E-175 | 1 | 560 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-41 | 23 | 147 | No hit | No description |
SuperFamily | SSF52172 | 7.54E-35 | 23 | 146 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.9E-31 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.312 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.1E-23 | 26 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.14E-22 | 27 | 139 | No hit | No description |
PROSITE profile | PS51294 | 11.963 | 205 | 264 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-19 | 205 | 265 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-30 | 206 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-25 | 208 | 261 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-6 | 210 | 260 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MTVEERKWSM GREGGPKDQF PVGLRVLAVD DDPICLRLLE ALLLQCQYQV TTTNQAIMAL 60 KMLRENKDKF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANGETKA VMKGIAHGAC 120 DYLLKPVRIE ELRNIWQHVV RRRKFDSKDH NNYDNGDDSD KAQQGQTTGG SSDHGGKLNR 180 KRKDQNEDDE DDGQENMHEN EELSTQKKPR VVWSVELHRK FVAAVNQLGI DKAVPKRILD 240 LMNVEKLTRE NVASHLQKYR LYLKRLSAVA SQQANMVAAF GGRDPSSLHI GSLDGYGNFH 300 ALAASGQLPA LSSFQTNGVL SRTNPAGYGL RGFATSGIVQ PEHTHCNTNN PINDLSKLQH 360 ISLPGSQHGK LLQGMPTTLE LDQLQQHKRM QEASIHLPGG FSGARLATGS SSNSFVNVTN 420 SPLLSQAYRQ HTQSKGLGNH SSVGIPSMSS DPFHMSVGGS SHLPDLGRCN DTWQDAVPLT 480 SYTSNTLSMN APFHHNDLAN MGASVPVVSH IDRNRLNISS SSCNSSKQLF EQQVPAWSSD 540 FVEALLVIIY ECKTSLHHSD SK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-25 | 204 | 267 | 1 | 64 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942128.1 | 0.0 | two-component response regulator ORR22 isoform X2 | ||||
Swissprot | Q6K8X6 | 1e-171 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A2H4A173 | 0.0 | A0A2H4A173_PHODC; Two-component response regulator | ||||
STRING | XP_008813668.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1856 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-124 | response regulator 12 |
Publications ? help Back to Top | |||
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